Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 118 3e-21 seq2 114 3e-20 >seq12 Length=514210 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || ||||| ||||| || |||||||| | || || |||| ||||| Sbjct 293110 CAGATATTCGTAAAGACGCTTACAGGCAAGACGATCACCATTGACGTCCAAAGCACTGAC 293169 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| ||||||||| || || || ||||| | ||| ||| Sbjct 293170 ACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCAGCAA 293229 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||||||||||| | || ||||||||||| | | || |||||| | Sbjct 293230 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAACATT 293289 Query 206353 CAGAAAGA 206360 ||||| || Sbjct 293290 CAGAAGGA 293297 >seq2 Length=77616 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || ||||| ||||| || || ||||| | || || |||| ||||| Sbjct 15411 CAGATATTCGTAAAGACGCTTACAGGCAAGACAATCACCATTGACGTCCAAAGCACTGAC 15470 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| ||||||||| || || || ||||| | ||| ||| Sbjct 15471 ACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCAGCAA 15530 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||||||||||| | || ||||||||||| | | || |||||| | Sbjct 15531 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAACATT 15590 Query 206353 CAGAAAGA 206360 ||||| || Sbjct 15591 CAGAAGGA 15598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820164032682