Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 150 3e-30 >seq4 Length=66353 Score = 150 bits (166), Expect = 3e-30 Identities = 365/541 (67%), Gaps = 14/541 (3%) Strand=Plus/Plus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||||| ||||| || | ||| || |||||||| || || |||||||| Sbjct 58987 ATCTGGAACATGTAC-AAAAACGCAGTGGCTAGTTTCTGGACCGCAGAAGAAGTCGACCT 59045 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || |||| || |||||| | ||| | || | |||| | || ||||| | Sbjct 59046 TGGAAGAGACATGGCTGACTGGGAGAAGCTTAACGCCAACGAAAGACACTTCATTTCCTA 59105 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| ||| |||||| || || || || || ||||||| | | | Sbjct 59106 CGTCCTCGCCTTCTTT-GCCGCCTCTGACGGAATTGTTAATGAAAACCTGGTTGAAAGGT 59164 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 || ||||| ||| | || || || | || ||||| |||||||| || | Sbjct 59165 TTGCCTCTGAGGTGCAAATCAGTGAAGCTCGATGCTTCTACGGCTTCCAGATTATGATTG 59224 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||| |||| | ||||| || || || ||||| ||| ||||| || | || Sbjct 59225 AGAACATCCACGCTGAGATGTACTCCCTACTCATTGACACGTACATCAAGAGCCAGAGCG 59284 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | ||| | | ||| ||||| || | | ||| | | || ||||| |||| Sbjct 59285 AAAAGACTTTCTTGTTTAATGCCATTGAGAACATCCCGGTCATAAAAAAGAAGGCAGACT 59344 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTCGGCT 1456194 ||||| || |||||| | || || | | || |||||| |||||||| || | || Sbjct 59345 GGGCGCTGCGGTGGAT-ATCA--GATGCTAAGGCCAGCTTTGCAGAGCGGCTAGTGGCCT 59401 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAG 1456252 ||||| | || || |||||||| ||||| || || ||| || ||||| ||||||||| Sbjct 59402 TTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATT-TGCAGCTATCTTCTGGCTCAAG 59460 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT--TCTGCTTTAGCAACGAATTTATCAGTCGCGACGAA 1456310 || || || || ||||| || || || || | ||||| ||||||| || |||||| Sbjct 59461 AAACGAGGACTTATGCCTGGGCTAACCTTCTCT---AACGAGCTTATCAGCCGAGACGAA 59517 Query 1456311 G 1456311 | Sbjct 59518 G 59518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807149022804