Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq12 87.8 2e-12 seq2 82.4 7e-11 >seq1 Length=651558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || || ||||| |||||||||||||| || | |||| |||| || |||||||| || Sbjct 630389 GTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCG 630448 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | || ||||||||| | ||| | || || |||||| ||| || |||| Sbjct 630449 GCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTC 630508 Query 35660 AGAGTTGCCACCGTGTCGCTCGAT--TCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 | ||| | ||||||| || || ||||| || | || || || || || || | | Sbjct 630509 ACAGTGTCAACCGTGT--CTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTG 630566 Query 35718 TTTTCACAAATATCTGCAT 35736 | || || || |||||||| Sbjct 630567 TCTTTACGAAGATCTGCAT 630585 >seq12 Length=514210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 35501 TCTTTATT--TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGT 35558 ||||| || ||| || || | ||| | ||||| ||| | ||| || ||||| ||||||| Sbjct 293344 TCTTTTTTCCTCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGT 293285 Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| || | | || | | || || |||||||| || || || || | | |||| Sbjct 293284 TGTAGTCTGAAAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCT 293225 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGC 35678 |||| ||||| | | |||||||||| |||||| ||| | | | | ||||| Sbjct 293224 GGTCAGAAGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAG 293165 Query 35679 TCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || || || | |||||||| || || || | || || || ||||||||||||| Sbjct 293164 TGCTTTGGACGTCAATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATTC 293105 >seq2 Length=77616 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| || || | ||| | ||||| ||| | ||| || ||||| ||||||||||| || | Sbjct 15635 TCCTCCCCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGA 15576 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || || |||||||| || || || || | | |||||||| ||||| Sbjct 15575 AAGTGTCCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGG 15516 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||| | | | | ||||| | || || Sbjct 15515 TATTCCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGAC 15456 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | ||||| || || || || | || || || ||||||||||||| Sbjct 15455 GTCAATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATTC 15406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793363333360