Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 237 2e-57 >seq4 Length=66353 Score = 237 bits (262), Expect = 2e-57 Identities = 413/595 (69%), Gaps = 7/595 (1%) Strand=Plus/Minus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || ||| || ||||| ||||| ||||| || |||| || || | |||||||| || || Sbjct 59544 TAGGCAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGT 59485 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 || |||||||| || || || || |||||||| || || || ||||| || || || || Sbjct 59484 TAGCCCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAA 59425 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATT 39789 |||||||||||| || ||||| || || || | |||| | | || | || ||| Sbjct 59424 GAAGATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATC 59365 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 ||||||| | | ||||| || || ||||| |||| || || | || || || Sbjct 59364 TGATATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGC 59305 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCT-TTAACATATGTATCTATTAACAGACTAT 39908 |||||| | | || || ||| | || || || | || || || || | || | Sbjct 59304 ATTAAACA-AGAAAGTCTTTTCGCTCTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGT 59246 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || | |||||||| |||||| ||||| || ||||| || |||| |||||| Sbjct 59245 ACATCTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCAC 59186 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | ||||| ||||| || ||| ||||| ||| |||||||| || ||||| ||| | Sbjct 59185 TGATTTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGG 59126 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||||| || || | || | ||| || | | |||| | || | | || | || Sbjct 59125 CGGCAAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCC 59066 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA-AAACGACGCCTCTGCC 40147 ||||| || ||| || | || |||||||| || ||||| |||| | ||| |||| Sbjct 59065 AGTCAGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTA-GCCACTGCG 59007 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 ||||||||||||||||| || || || || | |||||| || |||||||||| Sbjct 59006 TTTTTGTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908439372880