Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq34 147 3e-30 seq4 134 2e-26 >seq34 Length=240578 Score = 147 bits (162), Expect = 3e-30 Identities = 570/873 (65%), Gaps = 31/873 (4%) Strand=Plus/Plus Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCT 111286 |||| || || || || |||| ||| ||||| || |||| || | ||| | |||| Sbjct 163142 TTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTC-TGGGCTGGTAAACTCA 163200 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | || |||| ||| | ||| | ||| || ||||| | ||||| ||||| |||||| Sbjct 163201 ACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTCTTC 163260 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||| ||||||||||| ||||||||| |||||||| ||| | | ||| Sbjct 163261 CGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCCAGA 163320 Query 111407 ATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCC-GTCCCTCCGCCTCGT 111464 || |||||||| | || || || | ||| | || ||||| | ||||| ||||| Sbjct 163321 ATGAACTTCCAAAGCTTCCGC-GCCGAAACACT-CCGCCGGCCCAGACCCTCTCGCTCGT 163378 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACC---CACCGCGTCGGAGAGACCTGGTGCCT 111521 || | || | || ||||||| || || ||| ||| || | ||| | |||| Sbjct 163379 ACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGT--GAAGGCCCTTG-GCCT 163435 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCA--CCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 ||| ||||||||||| | ||| | ||| | ||||| ||||||| |||||| | || Sbjct 163436 GGTCCGGACAGAAAAGCGTCCACT--CCAAGTCGTCCTCCACCCGCTGCATGAACAAATC 163493 Query 111580 TGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637 || |||||||| | | ||| | | || | | ||| ||| || | || ||| Sbjct 163494 GGGTATCCACAGCGCCAGGAACA-AACTCCGGGCTCTGAG-CTCGTCTTTGCCCGTGTTT 163551 Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 | | ||| ||||| || | || ||| | |||||| ||||| || ||||| | || Sbjct 163552 TTCCTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAATG 163611 Query 111698 GATC----CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753 || | || | | |||| | || | ||||| | | || || | ||| || || Sbjct 163612 GAGCCTGGCCGCTTGTTGCCC-CCCTGGTCCACATACCTTGAGGTCGCATCAAAGACCCG 163670 Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813 |||||| || | || || | || || ||| || ||| || || || |||| Sbjct 163671 AAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGC 163730 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873 || | | |||||| | ||||| |||||||| ||| |||||| |||| |||| Sbjct 163731 TCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCACTG 163790 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATAAGGAAGCAAC 111932 | |||| ||| ||||| || | |||||||| | | ||| | | | | || || | Sbjct 163791 CTTAAGCGTTGAGTAGATCCCATCGATTGAGT-CGCTTTGCATAGATAGCAAAAAACAGC 163849 Query 111933 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992 | || | ||| || | ||| || || || || || ||||| || || || |||| | Sbjct 163850 TTGATAGCTGTGGAGATACTGTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGATGA--A 163907 Query 111993 TACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 112050 ||||| ||||| | || ||||| | | | |||||| || ||| ||| || Sbjct 163908 GTGCTTGGTTGACATGAGCTGATACGTCTCAATCGCTGCATCAATATCCTCCATGTGTAT 163967 Query 112051 GCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || | || |||||||| |||||||||| || Sbjct 163968 TCCCACGGCCACCCGCATCCACATGTACTGCGG 164000 >seq4 Length=66353 Score = 134 bits (148), Expect = 2e-26 Identities = 527/807 (65%), Gaps = 30/807 (4%) Strand=Plus/Minus Query 122379 GACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTA-ATGTTTTCCATAAAGTCAA 122437 ||||| |||||| |||||||||| ||| || || || | |||| ||||||||||| | Sbjct 59811 GACCCTCTTCTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGA 59753 Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGA---CGATCCG 122494 |||| |||| ||||| | || |||| | |||| | ||| ||| || || | Sbjct 59752 ATGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAA---GCGAGAGAAGAAGCCGGTCAG 59696 Query 122495 ACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGG 122553 ||| |||||||||||| | |||| | || || || || ||||| | || ||| Sbjct 59695 CAACAAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACG-GGG 59637 Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613 || || || | | |||| |||||||||| |||| ||||||| ||||| | ||| Sbjct 59636 AGAGCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTGATT 59577 Query 122614 GTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672 | ||| | | | | | ||| | ||| | | || || | |||| || || Sbjct 59576 TTATCGC-ACTTGTTGT-TTAGGTGCGAGTGTAGTAGG----CAAG-CAAAGTCGCAATG 59524 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 || || || |||||| ||||| || || |||||| ||| || ||||| || || || Sbjct 59523 AAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCG 59464 Query 122733 CTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACG 122791 ||||| | ||| | ||||| ||| |||||||||||||||||||| || || ||||| | Sbjct 59463 TTTCTTGAGCCAGAAGATAGCTGCA-AATGACCCGGAGAAGAAGATGCCTTCAACACAGG 59405 Query 122792 CAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTG 122848 |||| || | || || || || | ||| | ||| ||||| | ||| || | Sbjct 59404 CAAAGGCCACTAGCCGCTCTGCAA---AGCTGGCCTTAGCATCTGATATCCACCGCAGCG 59348 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 122908 |||| | |||||||| | || || | | | ||||| | ||| || ||| Sbjct 59347 CCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAGAAAGTCT 59288 Query 122909 TTTCAGATCCATC-CTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACC 122967 |||| | || | ||| ||||| ||||||| | | || || | || | || | Sbjct 59287 TTTC-GCTCTGGCTCTTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATG 59229 Query 122968 ATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATC 123026 | || || || | || | ||||||| | || ||||| || || || |||||| Sbjct 59228 TTCTCAATCATAATCTGGA-AGCCGTAGAAGCATCGAGCTTCACTGATTTGCACCTCAGA 59170 Query 123027 CGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAG 123086 ||||| | | | | || ||| ||||||||| || || | |||||||| || || Sbjct 59169 GGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGCGAG 59110 Query 123087 GATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTT 123146 || ||| ||||| | |||| || | || || ||| |||||| | | ||| | Sbjct 59109 GACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGTCAGCCATGTCTCT 59050 Query 123147 GGACAAATCAACTTCTTCCGCAGTCCA 123173 | || |||||||| || ||||| Sbjct 59049 TCCAAGGTCGACTTCTTCTGCGGTCCA 59023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031670283200