Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq34 141 1e-28 seq4 120 4e-22 >seq34 Length=240578 Score = 141 bits (156), Expect = 1e-28 Identities = 623/961 (65%), Gaps = 34/961 (4%) Strand=Plus/Plus Query 118524 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGA 118583 |||||||| || || || || || ||||| || || || || || | |||||| | ||| Sbjct 162961 ACATCCGCCAGGCCCTGAACTCCAAGGCCGATCGGCCGGTGCCTTAGATTAGAGTGCCGC 163020 Query 118584 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 118643 | ||| | ||| || || ||| || | | || || ||||| |||||| Sbjct 163021 GACTCCTCAAGGGGGTACTTGTTAACATCAATGATTTTGTTCAGGTTTTTAACAACAACC 163080 Query 118644 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCTTCATTG-ACAT--A 118699 || | |||| | | ||||| | | ||||| |||| | | || | | | | || | Sbjct 163081 TTAACGGTTTCTTTCAACTTTTGGAAGTCAAA-CTGCAAAGCGTCCCCCTCGGAAATGAA 163139 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 | || || || || |||||||||||||| || | |||| || || |||| Sbjct 163140 GGTTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTAAACTC 163199 Query 118760 TATAATTTCCGTGCACAA-GTTTGAA-CTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 | || || ||||||| | ||| | ||| || || || | |||||| || || | Sbjct 163200 AACTATCTC--TGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTGCTC 163257 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || ||| || |||||||| || ||||| ||| |||||||| | | | || Sbjct 163258 TTCCGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCCTCC 163317 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC-GCCCCTCTTCCT 118935 ||||| |||||| | | || || || | ||| | || ||| | | |||||| || Sbjct 163318 AGAATGAACTTCCAAAGCTTCCGC-GCCGAAACACTC-CGCCGGCCCAGACCCTCTCGCT 163375 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCC 118994 ||||| | || | || ||||||| || || |||| ||| ||||| | ||| Sbjct 163376 CGTACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTG-GCC 163434 Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCAC--CCTCCTCAACCCGCTTCATGAAGAGGT 119052 | || || ||||| || | ||| | ||| | ||||| ||||||| |||||| | | Sbjct 163435 TGGTCCGGACAGAAAAGCGTCCACT--CCAAGTCGTCCTCCACCCGCTGCATGAACAAAT 163492 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGA-TCCCGACAGCGAGCT--TCTTCATCCCCCTGAT 119109 | || ||||| |||||| ||| | | ||| | | ||||| |||| | ||| || | Sbjct 163493 CGGGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCTCGTCTT--TGCCCGTGTT 163550 Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 | | || ||||| ||||| | || ||| | ||||||||| |||||||| ||| | | Sbjct 163551 TTTC-CTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCACAA 163609 Query 119170 TTGACCC------CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223 | || || ||| | | || |||||| |||||||| | || || | ||| | Sbjct 163610 TGGAGCCTGGCCGCTT--GTTGCCCC-CCTGGTCCACATACCTTGAGGTCGCATCAAAGA 163666 Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTAT 119283 | |||||||| || | | || | || || ||| || ||| || || || Sbjct 163667 CCCGAAGCATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGC 163726 Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343 |||||| || | ||||||| | ||||| ||||| || ||| |||||| |||||| Sbjct 163727 TGGCTCGGATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGC 163786 Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403 ||| | | || | ||||||||||||||| ||||| | | | | | | || | Sbjct 163787 ACTGCTTAAGCGTTGAGTAGATCCCATCGATTGAGTCGCTTTGCATAGATAGCAAAAAAC 163846 Query 119404 AGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463 |||| || | || || ||| || ||||| || |||||||| || || ||||||| Sbjct 163847 AGCTTGATAGCTGTGGAGATACTGTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGATGA 163906 Query 119464 A 119464 | Sbjct 163907 A 163907 >seq4 Length=66353 Score = 120 bits (132), Expect = 4e-22 Identities = 521/805 (65%), Gaps = 28/805 (3%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCATAAAATCAAA 129795 |||| ||||||||||||||| | ||| || || ||| ||| | ||||||||| || || Sbjct 59810 ACCCTCTTCTCGAAGAAGTTGGACTTTCC-TCGCAGCGAGATGTACTCCATAAAGTCGAA 59752 Query 129796 TGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGAC 129855 |||||||| | ||| | || |||| | |||| | || || || || | || Sbjct 59751 TGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCAAGCGAGAGAAGAAGCCGGTCAGCAAC 59692 Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAGCG 129914 |||||||||||| |||| | ||| || || || ||||| | || ||||| | Sbjct 59691 AAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGAGACG-GGGAGAG 59633 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 | || | | |||| | |||||||| | || || || ||||| | || | | Sbjct 59632 CCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACGATTTTCTTGATTTTAT 59573 Query 129975 CCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGA 130031 | | | | | | | |||| ||| | | || || | |||| || || | Sbjct 59572 C-GCACTTGTTGTTTAGGTGCG---AGTGTAGTAGG----CAAG-CAAAGTCGCAATGAA 59522 Query 130032 GACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCT 130091 | || ||||| ||| ||| || || || |||||| || || ||||| || || || | Sbjct 59521 GGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCATAAGTCCTCGTT 59462 Query 130092 TCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGA 130151 |||| | |||||| || || |||||| || ||||||||||| || || ||||| || | Sbjct 59461 TCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTCAACACAGGCAA 59402 Query 130152 ACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCATCGCCC 130208 | || | || ||||| |||| ||| || ||| | ||| | |||| || ||||| Sbjct 59401 AGGCCACTAGCCGCTCTGCAA---AGCTGGCCTTAGCATCTGATATCCACCGCAGCGCCC 59345 Query 130209 ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTT 130268 | | ||||| || | || ||||| | ||| || || | ||| | |||||| Sbjct 59344 AGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAAACAAGAAAGTCTTTT 59285 Query 130269 C-TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATT 130327 | ||| || ||||||||| | || |||||| || || | || | |||| | Sbjct 59284 CGCTCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAGTACATCTCAGCGTGGATGTTC 59226 Query 130328 TCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA 130387 ||| | ||| | ||||||| | || ||||| || || || |||||| ||| Sbjct 59225 TCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGATTTGCACCTCAGAGGCA 59166 Query 130388 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447 || | | | | || ||| ||||||||| || || | ||||| || || |||| Sbjct 59165 AACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCAAAGAAGGCGAGGACG 59106 Query 130448 TACTTTATGAA-TTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC-GTCAAGATCCTTCG 130505 || ||||| | ||| ||| || |||| || ||| |||||| | || | |||| Sbjct 59105 TAGGAAATGAAGTGTCT-TTCGTTGGCGTTAAGCTTCTCCCAGTCAGCCATGTCTCTTCC 59047 Query 130506 AGAGATCTACCTCCTCCGCAGTCCA 130530 | || || || || || || ||||| Sbjct 59046 A-AGGTCGACTTCTTCTGCGGTCCA 59023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434875321520