Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34 183 3e-41 seq4 125 8e-24 >seq34 Length=240578 Score = 183 bits (202), Expect = 3e-41 Identities = 529/807 (66%), Gaps = 8/807 (1%) Strand=Plus/Plus Query 79036 ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAA 79095 ||||| || ||||| || || ||||| || || || || |||| || ||||| | | Sbjct 163135 ATGAAGGTTGGTAGCGCCATGGACGCCAGATTACAAACTGCTATCTCCTCTGGGCTGGTA 163194 Query 79096 ACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 | ||| | || |||| || | ||| |||||| || || | ||||||||||||| Sbjct 163195 AACTCAACTATCTCTGCACAAAGATTGCTTCCCTTGATAGTCCCAAGGTTCTTCTGGTTG 163254 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 |||||| ||| ||| |||||||||| ||||| ||| || ||||||| || | | Sbjct 163255 CTCTTCCGGTTGCAGCTGTCCTTGTAGAGGATGTAGGGCACGCCCGTCTCAATCTCAGCC 163314 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCG 79275 | |||| | | ||| | | ||| ||| ||| | | | | |||||| | Sbjct 163315 TCCAGAATGAACTTCCAAAGCTTCCGCGCCGAAACACTCCGCCGGCCCAGACCCTCTCGC 163374 Query 79276 ACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCAC 79335 ||||| || ||||| | || | |||||||| || ||| | |||||| | | Sbjct 163375 TCGTACCTCTCATACAAAGCCACAAACTCGTCCCCATAAACCTCGTGAAGGCCCTTGGCC 163434 Query 79336 TCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCC 79395 | || ||| || | || ||| ||| ||| | ||| ||| || |||||| | || Sbjct 163435 TGGTCCGGACAGAAAAGCGTCCACTCCAAGTCGTCCTCCACCCGCTGCATGAACAAATCG 163494 Query 79396 GGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGA 79455 || |||||||| ||| ||| | ||| | | ||| || | |||| ||| Sbjct 163495 GGTATCCACAGCGCCAGGAACAAACTCCGGGCTCTGAGCTCGTCTTTGCCCGTGTTTTTC 163554 Query 79456 CGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAA 79515 | |||||| || ||||| | || |||| ||||||||||||||| |||| | || | | Sbjct 163555 CTCAGCTCCAGGAAGTCAAAGACATCGGGGTGCCACGGCTCCAGGTAGACCAC-AATGGA 163613 Query 79516 CCCTTG-CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAG 79574 ||| | |||||| ||| ||||||| || |||| | || | || || || || Sbjct 163614 GCCTGGCCGCTTGTTGCCCCCCTGGTCCACATACCTTGAGGTCGCATCAAAGACCCGAAG 163673 Query 79575 CATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCG 79634 ||| ||||| | |||| | | || || || ||||| | ||| || || Sbjct 163674 CATCGGCACAAGCCCGTTCGAGTGCCCAAAGGTGCCCTTGATGTAGGAGTTGCTGGCTCG 163733 Query 79635 AATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTT 79694 ||||| | | || || |||||||| | ||||||||| ||||||||| ||| Sbjct 163734 GATGTTGTGGATGCTGACGCCAATGCCCCCAGCGTGCTTGGAGATTAGCGCGCACTGCTT 163793 Query 79695 GAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||| || ||||| |||||| | ||||| | || || ||||| || Sbjct 163794 AAGCGTTGAGTAGATCCCATCGATTGAGTCGCTTTGCATAGATAGCAAAAAACAGCTTGA 163853 Query 79755 CATCTGTGG-GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACT 79813 | |||||| | | | || |||||||| || || || ||||| || || ||||| || Sbjct 163854 TAGCTGTGGAGATACT-GTCCCGGCGTTAAAAAGAGTTGGCGTAGCATGGATGAAGTGCT 163912 Query 79814 T--TTGGCTCATCAGATCGTACGTCTC 79838 | ||| ||| || | |||||||| Sbjct 163913 TGGTTG--ACATGAGCTGATACGTCTC 163937 >seq4 Length=66353 Score = 125 bits (138), Expect = 8e-24 Identities = 520/804 (65%), Gaps = 21/804 (3%) Strand=Plus/Plus Query 59616 TTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAAT 59675 |||||| ||| || || | ||||| | ||||| || || ||||| ||||| || Sbjct 59020 TTCTGGACCGCAGAAGAAGTCGACCTTGGAAGAGACATGGCTGACTGGGAGAAGCTTAAC 59079 Query 59676 TACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 | |||| || ||||| ||||| |||||||| || || ||| |||||| Sbjct 59080 GCCAACGAAAGACACTTCATTTCCTACGTCCTCGCCTTCTTTGCCGCCTCTGACGGAATT 59139 Query 59736 GTGATGGAAAATATAGACATGAAC--TTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGT 59793 || | ||||| | | |||| ||| || || || || || || || || | Sbjct 59140 GTTAATGAAAACCTGGT--TGAAAGGTTTGCCTCTGAGGTGCAAATCAGTGAAGCTCGAT 59197 Query 59794 CGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853 ||||||| | ||| | | ||| |||||| | |||| |||||| || | | Sbjct 59198 GCTTCTACGGCTTCCAGATTATGATTGAGAACATCCACGCTGAGATGTACTCCCTACTCA 59257 Query 59854 TCGATAAGTTGGTCAAGGATCCGGAA-GAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-C 59911 | || | || ||||| | || || || ||| || |||| |||||| |||| | Sbjct 59258 TTGACACGTACATCAAG-AGCCAGAGCGAAAAGACTTTCTTGTTTAATGCCATTGAGAAC 59316 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATG--AG-TCCTGGAGC 59968 |||| || | ||| | || ||||| ||||| ||| |||||| || | || || Sbjct 59317 ATCCCGGTCA-TAAAAAAGAAGGCAGACTGGGCGCTGCGGTGGATATCAGATGCTAAGGC 59375 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 |||||| | || || | || ||||| || || ||||| ||||||||||| || || Sbjct 59376 CAGCTTTGCAGAGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTC 59435 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 || ||||| ||||||||||| || || || || ||||| || || | ||||| || Sbjct 59436 ATTTGCAGCTATCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTAACCTTCTCTAA 59495 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCAC 60147 |||||| || ||| ||||| ||||| ||| || ||||| || | || | || | Sbjct 59496 CGAGCTTATCAGCCGAGACGAAGGCCTTCATTGCGACTTTGC-TTGCCTACTACACTCGC 59554 Query 60148 ACCTATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAG 60207 ||||| || || | | | | | || | || || ||| | ||| || | Sbjct 59555 ACCTA----AACAA--CAAGTGCGATAAAATCAAGAAAATCGTTGAAGAGGCCGTTGTAA 59608 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | |||| |||||| | || || || || | ||||| || || | | | || Sbjct 59609 TTGAGAAAGAGTTCTTATGCGAGGCTCTCCCCGTCTCTCTCATTGGCATCAATG-TCGAT 59667 Query 60268 A-AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 | ||| ||||||||| ||||||| || ||||| || | | | |||| || | Sbjct 59668 ACTATGTGCCAGTACATTGAGTTTGTTGCTGACCGGCTTCTTCTCTCGCTTGGCGAGCCA 59727 Query 60327 CCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAG 60386 || ||| || | ||||| ||||||| |||||| ||||||| || ||| ||| Sbjct 59728 AAGATATACAACGCCCAGAACCCATTCGACTTTATGGAGTACATCTCGCTGCGAGGAAAG 59787 Query 60387 ACCAACTTCTTTGAGAAGCGGGTC 60410 |||||||||| |||||| ||||| Sbjct 59788 TCCAACTTCTTCGAGAAGAGGGTC 59811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524512024480