Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq1 104 3e-17 >seq4 Length=66353 Score = 111 bits (122), Expect = 2e-19 Identities = 297/444 (67%), Gaps = 20/444 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||| ||||| ||| || || ||||||| ||| ||| || |||||||| |||||| Sbjct 59819 TACTCAGAGACCCTCTTCTCGAAGAAGTTGGACTTTCCTCGCAGCGAGATGTACTCCATA 59760 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT---CTCCCCAAACTGTGCCATGAGG 74579 ||||||| ||||||| || ||| || ||| ||| |||| | | | | || | Sbjct 59759 AAGTCGAATGGGTTCTGGGCGTTGTATAT---CTTTGGCTCGCCAAGC-GAGAGAAGAAG 59704 Query 74580 C-GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 | | || || ||||| | ||||||||| ||| | ||| ||||| ||||| Sbjct 59703 CCGGTCAGCAACAAACTCAATGTACTGGCACATAGTATCGACATTGATGCCAATGAGAGA 59644 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA--GCCCATTGGACAATC 74696 | || || |||||| | ||||| |||| | | ||| ||| || || || Sbjct 59643 GACGGGGAGAGCCTCGCATAAGAACTCTTTCTCAA--TTACAACGGCCTCTTCAACGATT 59586 Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 || | || ||| | |||||| | | ||||| |||| || | || | |||| Sbjct 59585 TTCTTGAT---TTT---ATCGCACTTGTTGTTTAGGTGCGAGTGTAGTAGGCAAG-CAAA 59533 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || ||| |||||| |||| ||| || | || || || || | || |||||||| Sbjct 59532 GTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAGGCAT 59473 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 |||||| || ||||| | ||| ||||| || || || || ||||||||||||||| Sbjct 59472 AAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGCCTTC 59413 Query 74876 GACACACGCAAAGGCGACAAGGCG 74899 ||||| |||||||| || || || Sbjct 59412 AACACAGGCAAAGGCCACTAGCCG 59389 >seq1 Length=651558 Score = 104 bits (114), Expect = 3e-17 Identities = 198/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 152011 GTCATAGGACTCAAACGCG-TGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGC 152069 || || ||| |||| |||| || ||||||| | || || || |||||||| || || Sbjct 386914 GTGATCGGA-TCAAGCGCGGTGTAGATGTACCTGGCACTCGCTGCATCCTTTCCGCCCTG 386856 Query 152070 CAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAA 152129 || |||||||||||||| ||| ||||| ||| || |||||||| | || || || Sbjct 386855 AAGACGCGTTCCAAACTGCCCAATGGGCTGGAGCAGCGGCAGGTTGTTTGACCCAACAAA 386796 Query 152130 ATTCTGAGCCAAATTCACAATCGTGCCCTGC--AGACTCGCTTCACCGTGGTGATACGCC 152187 | ||| |||| || ||||| || | ||| |||||| || |||||||| || || Sbjct 386795 GTCCTGGGCCAGGTTGACAATGGT--CATGCAAAGACTCTGCTCCCCGTGGTGGTAGGCT 386738 Query 152188 GTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTC 152247 | ||||| || | || || || | ||| |||||||| || || | ||||| || Sbjct 386737 GAGTGCTCAGCTACATACCCAGCTAGCTGGGCCACCTTAATCTCGCTGCGAAGGTTTCTC 386678 Query 152248 TTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || | ||| ||||| ||||| | ||| || |||| ||||| Sbjct 386677 TTAAAGCAGCAGTAAAGAACCTTCCTCTGCCCCGGCTTCAGCCCGTC 386631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215712711600