Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq12 113 5e-20 seq2 113 5e-20 seq4 84.2 2e-11 >seq1 Length=651558 Score = 132 bits (146), Expect = 5e-26 Identities = 194/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| || ||||| ||| | ||||| | ||| |||| | |||| ||||| ||| Sbjct 386631 GACGGGCTGAAGCCGGGGCAGAGGAAGGTTCTTTACTGCTGCTTTAAGAGAAACCT-TCG 386689 Query 32044 -AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 || || || |||||||| ||||| | || || || || ||||| | ||||| ||||| Sbjct 386690 CAGCGAGATTAAGGTGGCCCAGCTAGCTGGGTATGTAGCTGAGCACTCAGCCTACCACCA 386749 Query 32103 CGGCGAG--GCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 ||| ||| | ||| | || | |||||||||||||| || ||| ||||||| || || Sbjct 386750 CGGGGAGCAGAGTCTTTGCATG--ACCATTGTCAACCTGGCCCAGGACTTTGTTGGGTCA 386807 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || |||||| | ||| |||| ||| |||||||| || || || || || ||| Sbjct 386808 AACAACCTGCCGCTGCTCCAGCCCATTGGGCAGTTTGGAACGCGTCTTCAGGGCGGAAAG 386867 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACC 32250 ||||| ||||| || | ||||||| |||| Sbjct 386868 GATGCAGCGAGTGCCAGGTACATCTACACC 386897 >seq12 Length=514210 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||||||||| |||||||| || || |||| || | Sbjct 293106 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACGATCACCATTGACGTCCAAAGCAC 293165 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | ||||| || |||||||||||||||||||| ||| | ||||| Sbjct 293166 TGACACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCA 293225 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || || || || ||||| || ||||||| | || || ||||||| || Sbjct 293226 GCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAA 293285 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||| ||| ||||||| || Sbjct 293286 CATTCAGAAGGAAAGCACGATTCATCTGGT 293315 >seq2 Length=77616 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||||||||| |||||||| || || |||| || | Sbjct 15407 AATGCAGATATTCGTAAAGACGCTTACAGGCAAGACAATCACCATTGACGTCCAAAGCAC 15466 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | ||||| || |||||||||||||||||||| ||| | ||||| Sbjct 15467 TGACACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCA 15526 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || || || || ||||| || ||||||| | || || ||||||| || Sbjct 15527 GCAAAGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAA 15586 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||| ||| ||||||| || Sbjct 15587 CATTCAGAAGGAAAGCACGATTCATCTGGT 15616 >seq4 Length=66353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 |||| || | || ||||||||||| ||||| || ||||| || |||||||| ||| Sbjct 59387 AGCGGCTAGTGGCCTTTGCCTGTGTTGAAGGCATCTTCTTCTCCGGGTCATTTGCAGCTA 59446 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || || || || || ||||| || || | || || |||||||| ||| Sbjct 59447 TCTTCTGGCTCAAGAAACGAGGACTTATGCCTGGGCTAACCTTCTCTAACGAGCTTATCA 59506 Query 64835 CTCGGGACGAGGGGCTCCA 64853 || ||||| || || || Sbjct 59507 GCCGAGACGAAGGCCTTCA 59525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310100587040