Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 8e-15 seq2 89.7 3e-13 >seq12 Length=514210 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| | ||||| ||||| |||||||| || ||||||||||| | | || || Sbjct 293316 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 293257 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| || || ||||| || || | | || ||||| | || | |||||||||||| | Sbjct 293256 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTC-CT 293198 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || |||| || ||| | |||||||| ||| | || || | ||| ||||| | Sbjct 293197 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCT 293138 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || || |||||||| Sbjct 293137 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| | ||||| ||||| |||||||| || ||||||||||| | | || || Sbjct 15617 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 15558 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| || || ||||| || || | | || ||||| | || | |||||||||||| | Sbjct 15557 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTC-CT 15499 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || |||| || ||| | |||||||| ||| | || || | ||| || || | Sbjct 15498 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCT 15439 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || || |||||||| Sbjct 15438 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729438897786