Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 167 5e-36 seq2 161 2e-34 seq1 127 5e-24 >seq12 Length=514210 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || || |||| ||| || || || ||||| || || | ||| ||| Sbjct 293327 CGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTC 293268 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||| || |||||||| || ||||||||||| | ||| ||||||| ||| | ||| Sbjct 293267 CTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCC 293208 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| |||||| || ||||| || || ||||||| ||||| || || | Sbjct 293207 TCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATG 293148 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| || || || |||||||| || | ||||||| Sbjct 293147 GTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || || |||| ||| || || || ||||| || || | ||| ||| Sbjct 15628 CGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTC 15569 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||| || |||||||| || ||||||||||| | ||| ||||||| ||| | ||| Sbjct 15568 CTTCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCC 15509 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| |||||| || ||||| || || ||||||| ||||| || || | Sbjct 15508 TCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATG 15449 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| || || || |||||||| || | ||||||| Sbjct 15448 GTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 >seq1 Length=651558 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || |||||||| | ||| || || || ||||| ||||| ||||| || ||| Sbjct 630368 AGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTT 630427 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || |||||||| || || || ||||| | || ||||| ||||| | ||||| Sbjct 630428 CCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCT 630487 Query 211017 TTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||| ||| || ||||| | || | ||||| || | || || || | || Sbjct 630488 TTGTCCTGGAT-TTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGT 630546 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| |||||||| || | |||||| Sbjct 630547 AATGGTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCAT 630585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151376231330