Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 203 3e-47 >seq4 Length=66353 Score = 203 bits (224), Expect = 3e-47 Identities = 587/888 (66%), Gaps = 24/888 (3%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| ||||| || || || | ||| |||||||| || | || ||| | ||| || | Sbjct 59826 TTTCTGGTACTCAGAGACCCTCTTCTCGAAGAAGTTGGACTTTCCTCGCAGCGAGATGTA 59767 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAA 4374 |||||||| || || || || |||||||| || ||| | | | || | | || Sbjct 59766 CTCCATAAAGTCGAATGGGTTCTGGGCGTTGTATATCTTTGGCTCGCCA-AGCGAGAGAA 59708 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATT 4433 | | |||||||| ||||| || || ||||||| ||| ||| ||| || || ||||| Sbjct 59707 GAAGCCGGTCAGCAACAAACTCAATGTACTGGCACAT-AGTATCGACATTGATGCCAATG 59649 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 | || || || || | || ||||||| || || ||||| ||| | Sbjct 59648 AGAGAGACGGGGAGAGCCTCGCATAAGAACTCTTTCTCAATTACAACGGCCTCTTCAACG 59589 Query 4494 ATATCTTTTATTTTATCTTTAGATG--GTTTATTTACTAAGTATCCAAACAATAAACACG 4551 || | || |||||||| | || ||||| | | | || | | || || | Sbjct 59588 ATTTTCTTGATTTTATCGC-ACTTGTTGTTTAGGTGCGA-GTGT------AGTAGGCAAG 59537 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| || ||||| | |||||||||| ||| || || |||||||| || |||| || | Sbjct 59536 CAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGCCCAG 59477 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | |||| || || ||||| || ||||| ||||||||||| || ||||| |||| Sbjct 59476 GCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAGATGC 59417 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT---GTCTTTAA 4728 |||| || |||||| || |||| || | | ||||||| || ||| | Sbjct 59416 CTTCAACACAGGCAAAGGCCACTAGCCG---CTCTGCAAAGCTGGCCTTAGCATCTGATA 59360 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| | ||||||| || || || || | | ||| || | | || || |||| Sbjct 59359 TCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTAA 59300 Query 4789 ATAATTTACTTTTTTC-AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | || | | ||||| ||| ||||| || || ||||| || |||||| ||||| Sbjct 59299 ACAAGAAAGTCTTTTCGCTCTGGCTCTTG-ATGTACGTGTCAATGAGTAGGGAGTACATC 59241 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 |||| || || || || || |||||| || ||||| ||||||| |||||| | | | Sbjct 59240 TCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGATT 59181 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || || || ||| ||||| || | |||||| || || || |||||| ||| ||| Sbjct 59180 TGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGCA 59121 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 || || || | || | || || |||| ||||| | ||||| || | ||||| Sbjct 59120 AAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGTCA 59061 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAACGACGCTTCCGCTTTTTT 5086 | || ||| | | || |||||||| | ||||| |||| | || | || ||||| Sbjct 59060 GCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTA-GCCACTGCGTTTTT 59002 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||| ||| || || ||||| | |||| ||||||||||| Sbjct 59001 GTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCT 58954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049381403986