Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 >seq4 Length=66353 Score = 217 bits (240), Expect = 2e-51 Identities = 405/590 (69%), Gaps = 5/590 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || |||||||||||||| |||| || || | |||||||| || || ||| Sbjct 59540 CAAGCAAAGTCGCAATGAAGGCCTTCGTCTCGGCTGATAAGCTCGTTAGAGAAGGTTAGC 59481 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| || || |||||||| || ||||| || || || || || ||||| Sbjct 59480 CCAGGCATAAGTCCTCGTTTCTTGAGCCAGAAGATAGCTGCAAATGACCCGGAGAAGAAG 59421 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA--TTATGA- 46806 |||||||| ||| || || || || || | |||| | | ||||| | | | ||| Sbjct 59420 ATGCCTTCAACACAGGCAAAGGCCACTAGCCGCTCTGCAAAGCTGGCCTTAGCATCTGAT 59361 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||||| | ||||| || ||||| || |||| || || | || || |||||| Sbjct 59360 ATCCACCGCAGCGCCCAGTCTGCCTTCTTTTTTATGACCGGGATGTTCTCAATGGCATTA 59301 Query 46867 AA-GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 || ||||||| |||| || || || | || || || || | || ||||| Sbjct 59300 AACAAGAAAGTCTTTTCGCTCTGGCTC-TTGATGTACGTGTCAATGAGTAGGGAGTACAT 59242 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 || | || ||||| ||||| ||||| || ||||| || |||| |||||| | || Sbjct 59241 CTCAGCGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCATCGAGCTTCACTGAT 59182 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || ||||| | ||| | |||| || || ||||| || ||||| ||| || || Sbjct 59181 TTGCACCTCAGAGGCAAACCTTTCAACCAGGTTTTCATTAACAATTCCGTCAGAGGCGGC 59122 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| || || | || | ||| || | | |||| | || | || || | |||||| Sbjct 59121 AAAGAAGGCGAGGACGTAGGAAATGAAGTGTCTTTCGTTGGCGTTAAGCTTCTCCCAGTC 59062 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 | || ||| || | || |||||||| || |||||||| ||| |||| ||||| Sbjct 59061 AGCCATGTCTCTTCCAAGGTCGACTTCTTCTGCGGTCCAGAAACTAGCCACTGCGTTTTT 59002 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 ||||| ||||| || || || || | ||||| || |||||||||| Sbjct 59001 GTACATGTTCCAGATGTCGTAGTACTGCACTGGAAAGATGACAAATCTAT 58952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934025709440