Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq12 107 4e-18 seq2 107 4e-18 >seq1 Length=651558 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| ||||| ||||| || | || || || || ||||||||||| || | ||| Sbjct 630364 CCTGAGCCTGAGCACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGT 630423 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| || || || || |||||||| || ||||||||||||||||| | | ||| || Sbjct 630424 TCTTCCGTCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCC 630483 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || ||||| || ||||| || || |||||||| |||| || || | Sbjct 630484 TTCTTTGTCCTGGATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAA 630543 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| ||||| ||||||| |||||| Sbjct 630544 GGTAATGGTCTTGCCTGTGAGTGTCTTTACGAAGATCTGCAT 630585 >seq12 Length=514210 Score = 107 bits (118), Expect = 4e-18 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 || ||| ||||| || ||||||| || || || || |||||||| || | | || Sbjct 293328 CCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGT 293269 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 || ||||| || || ||||| |||||||||||||| || |||||||| | | ||| Sbjct 293268 CCTTCCATCCTCAAGCTGCTTT--CCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATT 293211 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || ||||| ||| || || |||||| |||| | || | || ||| Sbjct 293210 CCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCA 293151 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| || || ||||| ||||| | ||||||| Sbjct 293150 ATGGTGATCGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 107 bits (118), Expect = 4e-18 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 || ||| ||||| || ||||||| || || || || |||||||| || | | || Sbjct 15629 CCGGAGCCTGAGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGT 15570 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 || ||||| || || ||||| |||||||||||||| || |||||||| | | ||| Sbjct 15569 CCTTCCATCCTCAAGCTGCTTT--CCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATT 15512 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || ||||| ||| || || |||||| |||| | || | || ||| Sbjct 15511 CCCTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCA 15452 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| || || ||||| ||||| | ||||||| Sbjct 15451 ATGGTGATTGTCTTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820179100182