Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12 159 7e-34 seq2 154 3e-32 seq1 98.7 2e-15 >seq12 Length=514210 Score = 159 bits (176), Expect = 7e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| | ||||||||| || || ||||||||||| | ||| || | |||||| Sbjct 293318 AGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCC 293259 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || || || ||||| ||||| | | ||| |||||| || || ||||||||||| Sbjct 293258 TCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC 293199 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || |||||||| |||||| | || || ||||| | || ||| || | ||||||||| Sbjct 293198 TGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTC 293139 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || | ||||| ||||||||||||||| Sbjct 293138 TTGCCTGTAAGCGTCTTTACGAATATCTGCATT 293106 >seq2 Length=77616 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| | ||||||||| || || ||||||||||| | ||| || | |||||| Sbjct 15619 AGCACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCC 15560 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || || || ||||| ||||| | | ||| |||||| || || ||||||||||| Sbjct 15559 TCAAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC 15500 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || |||||||| |||||| | || || ||||| | || ||| || | ||||| ||| Sbjct 15499 TGAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTC 15440 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || | ||||| ||||||||||||||| Sbjct 15439 TTGCCTGTAAGCGTCTTTACGAATATCTGCATT 15407 >seq1 Length=651558 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||||||| || || |||||||| || ||||| || | || ||||| || || |||||| Sbjct 630389 GTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTCAAGCTGCTTCCCG 630448 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 ||||| || | | || ||||| || || || || ||||| ||||| || | || Sbjct 630449 GCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGTCTTC 630508 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || || || | ||||| ||| || || || | || || ||||| || || | ||| Sbjct 630509 ACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTTGCCTGTGAGTGTC 630568 Query 283083 TTAACGAATATCTGCAT 283099 || ||||| |||||||| Sbjct 630569 TTTACGAAGATCTGCAT 630585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738636723468