Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 165 2e-35 seq2 161 2e-34 seq1 136 1e-26 >seq12 Length=514210 Score = 165 bits (182), Expect = 2e-35 Identities = 150/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || ||||| || ||||||||| | || || ||||| | ||| Sbjct 293110 CAGATATTCGTAAAGACGCTTACAGGCAAGACGATCACCATTGACGTCCAAAGCACTGAC 293169 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||||||| || ||||| ||| | ||||||||| Sbjct 293170 ACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCAGCAA 293229 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||||| ||||| || ||||||||||| ||| | || || ||| | Sbjct 293230 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAACATT 293289 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 293290 CAGAAGGAA 293298 >seq2 Length=77616 Score = 161 bits (178), Expect = 2e-34 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || ||||| || || |||||| | || || ||||| | ||| Sbjct 15411 CAGATATTCGTAAAGACGCTTACAGGCAAGACAATCACCATTGACGTCCAAAGCACTGAC 15470 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||||||| || ||||| ||| | ||||||||| Sbjct 15471 ACAATAGAGAACGTAAAGGCAAAGATTCAGGACAAGGAGGGAATACCTTCTGACCAGCAA 15530 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||||| ||||| || ||||||||||| ||| | || || ||| | Sbjct 15531 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGGACACTTTCAGACTACAACATT 15590 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 15591 CAGAAGGAA 15599 >seq1 Length=651558 Score = 136 bits (150), Expect = 1e-26 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| || || || ||| | || ||||| | |||||| Sbjct 630582 CAGATCTTCGTAAAGACACTCACAGGCAAGACCATTACCTTAGACGTGGAGAATTCAGAC 630523 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || | || | || || || ||| || |||||||||||||| |||||||| |||||||| Sbjct 630522 ACGGTTGACACTGTGAAGACCAAA-ATCCAGGACAAAGAAGGCATCCCTCCCGACCAGCA 630464 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | ||||| || ||||| || ||||| || || ||||| |||||||| ||||| ||| | Sbjct 630463 GAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGACGGAAGAACTCTTGCAGATTACAACAT 630404 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || ||| || | || ||||| | || ||||| Sbjct 630403 TCAGAAGGAAAGCACCATCCACCTTGTGCTCAGGCTCAG 630365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730552242148