Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20displodere_20[genbank_20GCA_5F001642395.1_202016-05-11] 42 sequences; 3,066,400 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 seq2 104 2e-17 seq1 93.3 4e-14 >seq12 Length=514210 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||| | |||||| |||||||||||||| ||||| || || || | | || || Sbjct 293316 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 293257 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| |||||||| || || | || ||||| | || | | |||||||||| | Sbjct 293256 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 293198 Query 41773 GATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | ||||| | ||| | | ||||| | | || || | || ||||| | Sbjct 293197 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATCGTCT 293138 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || |||||||||||||| |||||||| Sbjct 293137 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 293107 >seq2 Length=77616 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||| | |||||| |||||||||||||| ||||| || || || | | || || Sbjct 15617 CACCAGATGAATCGTGCTTTCCTTCTGAATGTTGTAGTCTGAAAGTGTCCTTCCATCCTC 15558 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| |||||||| || || | || ||||| | || | | |||||||||| | Sbjct 15557 AAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCAGAAGGTATTCCCTCCTTGTCC-T 15499 Query 41773 GATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | ||||| | ||| | | ||||| | | || || | || || || | Sbjct 15498 GAATCTTTGCCTTTACGTTCTCTATTGTGTCAGTGCTTTGGACGTCAATGGTGATTGTCT 15439 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || |||||||||||||| |||||||| Sbjct 15438 TGCCTGTAAGCGTCTTTACGAATATCTGCAT 15408 >seq1 Length=651558 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || | ||||| |||||||||||||| || || | || || | |||| || Sbjct 630376 CACAAGGTGGATGGTGCTTTCCTTCTGAATGTTGTAATCTGCAAGAGTTCTTCCGTCCTC 630435 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| ||||| || || || | ||| ||||| | || | || || |||||| Sbjct 630436 AAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTG 630495 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||||| ||||| | || ||||| |||||| || | || || || || Sbjct 630496 GATTTTGGTCTTCACAGTGTCAACCGTGTCTGAATTCTCCACGTCTAAGGTAATGGTCTT 630555 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||||||||| ||||||||| Sbjct 630556 GCCTGTGAGTGTCTTTACGAAGATCTGCATG 630586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303757290400