Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq105 84.2 5e-11 >seq105 Length=68279 Score = 84.2 bits (92), Expect = 5e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 |||| |||| || ||| |||||||| | ||||| ||||| | ||| || ||| Sbjct 55845 TCAAGAAAATAGTTTTAGAGGCAGTTGAGATTGAAAAAGAGTTTTTAACTGATGCACTTC 55904 Query 230438 CATGTCGCCTTATT-GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCC 230496 | ||| | ||| | ||||| ||| | || |||| | |||||||| || || || || Sbjct 55905 C-TGTTTCTTTAATAGGCATCAACTCAGACTCTATGTGCCAGTACATTGAGTTTGTGGCA 55963 Query 230497 GACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCA 230556 || || | | ||||||| | | || || || |||||| | | ||||| || | Sbjct 55964 GATCGGTTACTAATTGCACTAAATGAAGAAAAGGTCTACAACACAACAAACCCATTCGAT 56023 Query 230557 TTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 ||||||||||| ||||| || | | | || | || ||||| || | |||||| |||| Sbjct 56024 TTTATGGAGCTAATTTCACTGCGAAGAAAAGCAAATTTCTTTGAGATGCGTGTAGGTGAG 56083 Query 230617 TAT 230619 ||| Sbjct 56084 TAT 56086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821479073180