Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq105 132 5e-26 >seq105 Length=68279 Score = 132 bits (146), Expect = 5e-26 Identities = 496/768 (65%), Gaps = 20/768 (3%) Strand=Plus/Minus Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||| | ||| || ||||| || || || |||||||| | || |||| || ||||| | Sbjct 55972 TAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAA 55913 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | || ||||| || || || ||||| || || || |||| || || ||| Sbjct 55912 AGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTC-----TAAA 55858 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA--GACATGCG 16969 |||| || | | || || | |||||| || || || | | |||| || Sbjct 55857 ACTATTTTCTTGATATTCTTACACT---TGTTTATGAGGTGAGAATGTAAAAGACAGGCA 55801 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 || || || || | ||| || ||||||||||| || |||||||| || || | || ||| Sbjct 55800 AAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGC 55741 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || |||| ||||| | ||| || || | || || || ||||| |||||||| ||| Sbjct 55740 ATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCC 55681 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || ||||||| || | || | || || | | | || |||| ||||| Sbjct 55680 TCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCAC 55621 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT--- 17206 | | |||| || || || | ||||| | || | || || |||| ||| Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAG 55561 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || |||| ||| | | ||| || | || || || || || |||| || ||||| || Sbjct 55560 AAGTTCT-TTTCTGCAGTA--TCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCT 55504 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 | ||||||||| || || || || |||||||| || |||| || || ||||||| Sbjct 55503 GCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGA 55444 Query 17327 ACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 ||||| | | | || | ||| ||| ||||| || || || || || || || || Sbjct 55443 ACTTCTGAAGCA-AACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAA 55385 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | || || || || | | | || | | | || |||||| Sbjct 55384 GAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGC 55325 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA-AAAACTAGCCACTGCCTTTTTAT 17504 | || || || | || |||||||| | ||||| || ||| |||||||| | ||||| Sbjct 55324 TTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACT-GCCACTGCATCTTTAT 55266 Query 17505 ACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTAT 17552 |||| ||||||||||| | | ||| ||||| | |||| |||||| Sbjct 55265 ACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTAT 55218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544396706480