Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq105 194 2e-44 >seq105 Length=68279 Score = 194 bits (214), Expect = 2e-44 Identities = 486/735 (66%), Gaps = 14/735 (2%) Strand=Plus/Minus Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 ||| | |||||| ||||| || || || || ||||| |||| | || || ||||| | Sbjct 55972 TAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAA 55913 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || ||||| || | |||||||| | || ||| ||| |||| || ||| || || Sbjct 55912 AGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT 55853 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTG----TTTAAACATTAGACACG 16205 | || | | || || | | |||| ||||| | |||| ||||| | Sbjct 55852 TTTCTTGA-TATTCTTACACTTGTT-TATG----AGGTGAGAATGTAAA----AGACAGG 55803 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | ||||| || || |||||||| ||||||||||| || ||||| || ||||| | |||| Sbjct 55802 CAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTG 55743 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| |||| ||||| | |||||| || | |||||||| || || |||||||| | Sbjct 55742 GCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTC 55683 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 |||| ||| |||||||||| | || | || || | ||| || || | |||| Sbjct 55682 CCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCC 55623 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 | | | |||| || || || | |||||| | || | || || |||| || | Sbjct 55622 ACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATA 55563 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | | ||||| | |||| | || || || || || |||||||| ||||| |||| Sbjct 55562 AGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTG 55503 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 ||||||||| ||||| || || ||||| ||||| |||| ||||| |||||| | Sbjct 55502 CGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAA 55443 Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 |||| ||| | ||| | | ||| ||||| || || || || |||||||| | Sbjct 55442 CTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGA 55383 Query 16626 ACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTA 16685 | || | || | || || | | | || | | | || | | ||| || | Sbjct 55382 ATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTT 55323 Query 16686 AATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACA 16745 || || || | || |||||||||| ||||| || |||||||| | |||||||| Sbjct 55322 GGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACA 55263 Query 16746 TTTTCCAAATATCAT 16760 || ||||||||||| Sbjct 55262 TTGCCCAAATATCAT 55248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413210961520