Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq165 91.5 1e-13 >seq165 Length=118933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 209/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 || ||||| || |||||||| | |||||||||||||||||| || || || ||| ||| Sbjct 85731 GATCTTGGTCCAATTTACGGGTACCAGTGGAGACATTTTGGTGCAGAGTACAAAACCTGC 85790 Query 18852 CAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAAC--TGTTATAGATACAATTA 18909 | |||||| | |||| || || ||| | |||| || || || | | | Sbjct 85791 GAGGATGACTATTCTAATAAAGGCATTGACCAGTT--AAACCAAGTGATTGAGGAATTAA 85848 Query 18910 AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCT 18969 ||||||| ||| | || || || |||||| ||| | ||||||||| ||| | | Sbjct 85849 AAACAAATCCAAACAGTCGCCGTATGATTGTATGTGCATGGAATCCATGCGATCTAGACC 85908 Query 18970 TAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTAT 19029 |||| || |||||||| || |||| ||||| || | ||| || | || Sbjct 85909 AGATGGCTCTTCCTCCATGCCATGTCTTATTCCAGTTCGTTGTAGTAAATGGAAAGCTAA 85968 Query 19030 CCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTG 19089 |||| ||||||| ||||| || ||| | || || || || || || || ||||| Sbjct 85969 ACTGCATGTTATACCAAAGATCTGGTGATGTAGGGCTAGGAGTGCCTTTTAATATTGCAA 86028 Query 19090 GATATGCACTTCT 19102 | ||||| || || Sbjct 86029 GTTATGCCCTACT 86041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503094374370