Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq105 279 6e-70 seq35 214 2e-50 >seq105 Length=68279 Score = 279 bits (308), Expect = 6e-70 Identities = 419/593 (71%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || || ||||| || || || ||||| || || | ||||| || || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||| | ||| |||||||| || || || |||||||||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATG 24310 ||||| ||||| ||||| |||| || || ||| || | | | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||||| | | ||||| || ||||||||||||| ||| || |||| || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || | || |||||||| || ||||| ||||||||||||||||| |||||| | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 || |||||| | ||| | ||| |||| |||||||| || ||||| || ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 24610 ||| || || | ||||| ||||| | | | || | || |||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 24611 A--TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 | ||| | | || || | || |||||||| | ||||| ||| |||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 24721 |||||||| ||| || ||||||| | ||||| ||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 >seq35 Length=104599 Score = 214 bits (236), Expect = 2e-50 Identities = 913/1437 (64%), Gaps = 32/1437 (2%) Strand=Plus/Minus Query 52832 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 52891 ||||| || || | ||| || |||| ||||| || || |||||||||| || ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 52892 ATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 52951 || |||||||||| || | | | || | || || || ||||| || |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 52952 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 53011 || | | || || |||||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 53012 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCA 53068 | |||||| || | | || |||| || || | | | | | || || || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 53069 CCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 53128 ||| | ||||| | ||||| ||||| ||| | | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 53129 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 53188 | | | || | ||| || | ||| |||||||| || | | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 53189 TTACTGGT-ATACGGTTCCACAG-ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 53246 |||||||| | || | || || |||||||| ||| | |||||| | ||||| || | Sbjct 79021 TTACTGGTGAAACCCT--CAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGG 78964 Query 53247 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 53306 | ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| | Sbjct 78963 TTGGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAA 78904 Query 53307 GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATAC 53366 || |||| | ||| | || || || || || || || | Sbjct 78903 GACCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTC 78844 Query 53367 CGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425 | || || | | || ||| |||||| |||||||| || | ||||| || |||||| Sbjct 78843 CCTTGCTCACAGGACTG-CCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCA 78785 Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485 ||||| | ||||| | ||||||||||| || || || |||| ||| | Sbjct 78784 TTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCT 78725 Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 |||||| ||| ||||||||||| | ||||| | | ||||||| || || ||| Sbjct 78724 GCTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACA 78665 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 53605 || || || ||||| | || || ||||||| | | ||||| | | || || | Sbjct 78664 CCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTG 78605 Query 53606 TTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 53665 || | ||| || ||||| || |||||| || | | || ||| | || ||||| || || Sbjct 78604 TTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTA 78545 Query 53666 AGAAAATCAAATTGTCCATCTATTACAA-ACATGTT--CAATGCAATAGATGCCAGATTA 53722 || | ||||| ||| || ||| ||||| | ||||| |||||||| ||| Sbjct 78544 TTGAAGTTAAATT---CATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTA 78488 Query 53723 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 53782 || || || | ||||| | ||| | || | | ||||||| || | || || | | Sbjct 78487 CACACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCC 78428 Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 ||||| ||| | ||| || || || |||||| ||||||| || ||||| |||||| Sbjct 78427 TTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATG 78368 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC---- 53898 | || ||| |||||||||| | || | ||| || ||||| | | || Sbjct 78367 TACGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGA 78308 Query 53899 ----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 | || || | || ||||| |||| ||||||| || ||||| ||||| Sbjct 78307 ACCACCTTCTTCTCAAT-----TCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAA 78253 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCC--AGGACATTCATCCGGACACATCAACGACCA 54012 | || ||||| | | || || || | ||| || || || | | || ||| Sbjct 78252 ATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCA 78195 Query 54013 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 54072 || ||||| || | |||| |||||||| | ||||| | ||| || ||| || | Sbjct 78194 ATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAA 78135 Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132 || ||| | || ||| || || || ||||||||| | | ||| | || | | || Sbjct 78134 ATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATAT 78075 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTG 54192 || ||||| || || | || | || |||||||| || || |||||||| Sbjct 78074 GTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTG 78015 Query 54193 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || | || | | ||| || | | ||||||| ||| ||||| || ||||| || Sbjct 78014 GTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720219597280