Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq103 122 1e-22 seq106 91.5 2e-13 seq109 87.8 3e-12 >seq103 Length=70461 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| |||||||||| || || ||||| || || | || | ||| ||| | Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| ||||| || || ||||| |||||||| |||||||| || ||| Sbjct 50188 GACACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAA 50247 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || |||||||||||||| | |||||| | ||||| | || || || Sbjct 50248 CAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAAC 50307 Query 124719 ATTCAAAAAGAA 124730 || ||||||||| Sbjct 50308 ATACAAAAAGAA 50319 >seq106 Length=63987 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| |||| ||||| || || || || || || | || | ||| ||| Sbjct 37446 AATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAG 37505 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| ||||| || || || || || ||||| || || || || || Sbjct 37506 TGACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCA 37565 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAAC 124702 |||||| | || ||||||||||||||| | || ||| | |||| Sbjct 37566 ACAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAAC 37610 >seq109 Length=56162 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | |||||||| || || || || || || | || | ||| ||| | Sbjct 25217 ATGCAGATATTCGTGAAGACACTCACTGGGAAGACAATTACACTGGAAGTAGAACCAAGT 25158 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||| ||| | || || || || ||||||||||| |||||||| || ||| Sbjct 25157 GACTCAATAGAGAATGTCAAGGCAAAGATACAGGATAAAGAAGGGATACCACCCGACCAA 25098 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || || || || |||||||||||||| |||| ||| Sbjct 25097 CAGAGACTAATCTTTGCAGGAAAACAGCTAGAAGAT 25062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454243564800