Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq105 251 7e-62 >seq105 Length=68279 Score = 251 bits (278), Expect = 7e-62 Identities = 573/853 (67%), Gaps = 18/853 (2%) Strand=Plus/Minus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||| ||| |||| || | | | ||||||||||||| ||||| | | |||||| | Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCT 56031 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CATCCCAATTCCAACAAT 16063 |||||||||| || || ||| ||| ||| || || ||| | | | | | | Sbjct 56030 CCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTT-AGTGCAATTAGT 55972 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | ||| |||||||| || || ||||| ||| | || |||| || |||||||| Sbjct 55971 AACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAA 55912 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 |||||| | ||| || |||||||| | |||||| || | ||| || || | | ||| Sbjct 55911 GAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATT 55852 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTG----TTTAAACATTATACAAGC 16239 | |||| || || | || ||||| | ||| | |||| | ||| || Sbjct 55851 T-TCTTGATATTCT--TACACTT---GTTTATGAGGTGAGAATGTAAA----AGACAGGC 55802 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| ||||| || | |||||| || || || || | |||||| || || ||||||||||| Sbjct 55801 AAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGG 55742 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || |||| || |||| ||| || || | |||||||| ||||| |||||||| || Sbjct 55741 CATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCC 55682 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 || || ||||| ||||| | | || | | | | || | |||||| Sbjct 55681 CTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCA 55622 Query 16420 ttttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||| | ||| || || |||| |||| || ||||| ||||| | |||| Sbjct 55621 CCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGA-ATATTCTCCATTGCCTGGAATA 55563 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | || |||||| |||| || || || |||||||||||||||||||| |||| Sbjct 55562 AGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTG 55503 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 || || || || || || || || || || || ||||| || ||| |||||| | Sbjct 55502 CGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAA 55443 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 |||| || ||||||||| |||||||||| || || |||||||| || ||||| | Sbjct 55442 CTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGA 55383 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAA 16718 | ||||||| | ||||| | | | || || | || ||| |||||||| Sbjct 55382 ATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTT 55323 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 || ||||| || || || |||||| ||||||| || || || || | |||||||| Sbjct 55322 GGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACA 55263 Query 16779 TTTTCCATATGTC 16791 || ||| || || Sbjct 55262 TTGCCCAAATATC 55250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510924659600