Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq105 232 6e-56 >seq105 Length=68279 Score = 232 bits (256), Expect = 6e-56 Identities = 590/885 (67%), Gaps = 22/885 (2%) Strand=Plus/Minus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 ||| ||| |||| || | | |||||||| || | ||| | | |||||| || | Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCT 56031 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||||||||| ||||| ||||||| | | || || || | |||| | | ||||| Sbjct 56030 CCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTA 55971 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 | | ||| || | |||||||| || || |||| | || | || || ||||||| Sbjct 55970 ACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAG 55911 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||||||| | || |||||||| |||||||| || || ||||| | || Sbjct 55910 AAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTT 55851 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC--GCAAA 14211 || | ||| ||| ||| | | ||| || || || | ||| || ||||| Sbjct 55850 TCTTGATA--TTC-TTACACT-----TGTTTATGAGGTGAGAATGTAAAAGACAGGCAAA 55799 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||||| ||||| || |||||||| || || || ||||| || || || | |||||||| Sbjct 55798 GTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCAT 55739 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 | |||| || || | ||| || |||| || |||||||| || |||||||||||||| Sbjct 55738 AAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTC 55679 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 || ||||| || | || | ||| |||| | | |||| |||||||| | Sbjct 55678 TACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCACCT 55619 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA-AT 14450 ||||| || | || ||||| || | | || | || || || | ||||| | Sbjct 55618 AAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAGAA 55559 Query 14451 GTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 ||| ||| ||| |||| |||| ||||| || || || ||||| |||||||| || | Sbjct 55558 GTT-CTTTTCTGCAGTATCCTTG--ATGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 |||||||||||| || || || || || || |||||||| || || ||| || Sbjct 55501 GTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAAC 55442 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||||| ||| ||||| | || |||||||| || || ||||| || ||||| || Sbjct 55441 TTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAA 55382 Query 14629 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TGAGTTTTTTCCAATCGGCT 14686 ||| | || | ||||||| | |||| |||| | || |||| ||| || ||| Sbjct 55381 TGCAAGTACATAGGAGATAAAGTGT--CTCTCATTTGCATTTAGCTTTTCCCAGTCAGCT 55324 Query 14687 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCA-AAAACTAGCAACAGCTTTTTTATA 14745 || || || | || ||||| || | ||||| || ||| || || || | |||||| Sbjct 55323 TGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACT-GCCACTGCATCTTTATA 55265 Query 14746 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 |||| |||| || || | || ||| || |||| |||||||| Sbjct 55264 CATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCT 55220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344478546480