Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq106 87.8 1e-12 seq103 82.4 6e-11 >seq106 Length=63987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGAT-TCTTTTTGAATGTTGTAGTCGG 18156 |||||| | ||||| ||||| | |||| || || | || || || ||||||||||| | Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAA-TGGTGCTCTCCTTCTGGATGTTGTAGTCAG 37616 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | ||| | | |||||||| |||||| || ||| |||| | ||||||||| || | Sbjct 37615 AAAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAG 37556 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | |||||||| || || | |||| || || | | | ||||||| || || Sbjct 37555 GGATTCCTTCCTTGTCCTGTATCT-TTGCTTTTACATTCTCTATTGTGTCACTTGGTTCT 37497 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| || | || || || | |||||||||||| || |||||| Sbjct 37496 ACTTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq103 Length=70461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | ||||| | || | |||| ||| ||||||||| ||||||||||| | Sbjct 50355 TCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGA 50296 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||| |||| ||||| || ||| |||| | ||||||||| || || Sbjct 50295 AAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGG 50236 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || || | |||| || || | | | ||||||| || || Sbjct 50235 TATTCCTTCTTTGTCTTGTATCT-TTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTA 50177 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || ||| |||| || || | ||| ||||| || || ||||| Sbjct 50176 CTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343140074570