Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq105 279 6e-70 seq35 206 3e-48 >seq105 Length=68279 Score = 279 bits (308), Expect = 6e-70 Identities = 419/593 (71%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || || ||||| || || || ||||| || || | |||||||| || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| | ||| |||||||| || || || || |||||||| || ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATG 33757 ||||| ||||| ||||| |||| || || ||| || | | | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||||| | | ||||| || ||||||||||||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || | || |||||||| || || || ||||||||||||||||| |||||| | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 || ||||||| | ||| | ||| |||| |||||||| || |||||||| ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 34057 ||| || || | ||||| ||||| | | | || | || |||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 34058 A--TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | ||| | | || || | || |||||||| | ||||| ||| |||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 |||||||| ||| || ||||||| | ||||||||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 >seq35 Length=104599 Score = 206 bits (228), Expect = 3e-48 Identities = 909/1435 (63%), Gaps = 28/1435 (2%) Strand=Plus/Minus Query 62070 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62129 ||||| || || | ||| || |||| ||||| || || |||||||||| || ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 62130 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62189 || || ||||||| || | | | || | || || || ||||| || |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 62190 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAA 62249 || | | || || |||||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 62250 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 62306 | |||||| || | | || |||| || || | | | | | || || || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 62307 CCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62366 ||| | ||||| | ||||| ||||| ||| | | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 62367 CTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62426 | | | || | || || | |||||||||||| || | | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 62427 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62486 |||||||| | || | |||||||| ||| | |||||| | ||||| || || Sbjct 79021 TTACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTT 78962 Query 62487 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 62546 ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| ||| Sbjct 78961 GGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGA 78902 Query 62547 TGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCG 62606 |||| | ||| | || || || ||| ||| || || || || Sbjct 78901 CCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTCCC 78842 Query 62607 TTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACA 62665 || || | | || ||| |||||| || ||||| || | ||||| || |||| | Sbjct 78841 TTGCTCACAGGACTG-CCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCATT 78783 Query 62666 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC 62725 ||||| | ||||| | |||||||||||||| || || |||| ||| ||| Sbjct 78782 TGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTGC 78723 Query 62726 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACC 62785 |||| ||| ||||||||||| | ||||| | | || |||| || || ||||| Sbjct 78722 TTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACACC 78663 Query 62786 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 62845 || || ||||| | || || ||||||| | | ||||| | | || || | || Sbjct 78662 CATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTT 78603 Query 62846 AATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG 62905 | ||| || ||||| || || ||| || | | || ||| | || ||||| || || Sbjct 78602 TACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTATT 78543 Query 62906 AAAATCAAATCGCCCATCTATTACAA-ACATGTT--CAATGCAACAGATGCCAGATTACA 62962 || | |||| ||| || ||| ||||| | ||||| |||||||| ||||| Sbjct 78542 GAAGTTAAAT---TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACA 78486 Query 62963 CACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 63022 ||| || | ||||| | ||| | || | | ||||||| || | || || | ||| Sbjct 78485 CACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTT 78426 Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 ||| ||| | ||| || || || |||||| ||||||| || ||||| |||||| | Sbjct 78425 GATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTA 78366 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC------ 63136 || ||| |||||||||| | || | ||| || ||||| | || || Sbjct 78365 CGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAAC 78306 Query 63137 --CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAAC 63194 | || || | || |||| |||| ||||||| | ||||| ||| || Sbjct 78305 CACCTTCTTCTCAAT-----TCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAAAT 78251 Query 63195 TCGTCTCCCCAAACATTGTCCAATC--TAGGACATTCATCCGGACACATCAACGACCACT 63252 || ||||| | | || || | | | ||| || || || | | || ||| | Sbjct 78250 TCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCAAT 78193 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 | ||||| || | |||| |||||||| | ||||| | ||| || ||| || | || Sbjct 78192 CCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAAAT 78133 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 ||||| || ||| || || || ||||||||| | | ||| | || | | || | Sbjct 78132 TTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATATGT 78073 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | ||||| || || | || | | || |||||||| || || |||||||| | Sbjct 78072 CTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTGGT 78013 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 | | || | | ||| || | | ||||||| ||| ||||| || || ||||| Sbjct 78012 CAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816135674080