Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq105 262 4e-65 seq35 237 1e-57 >seq105 Length=68279 Score = 262 bits (290), Expect = 4e-65 Identities = 542/798 (68%), Gaps = 25/798 (3%) Strand=Plus/Minus Query 11454 TTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA 11513 ||| ||| | |||||| || || || || ||||| |||| | | || || |||| Sbjct 55976 TTAGTAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTA 55917 Query 11514 TAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGA 11573 | | | || |||| ||| | || |||||||| ||||| || | ||| || || | | Sbjct 55916 TTAAAGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAA 55857 Query 11574 TTATCGACGTTATAACTTCCTTAGA-TGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 ||| | | ||| | |||| | | || ||| | | | |||| | ||| Sbjct 55856 CTATTTTCTTGATA---TTCTTACACTTGTTTATGAGGTGAGAATGTAAA----AGACAG 55804 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||| ||||| || | ||||| ||||| || || || || ||||| || || | || Sbjct 55803 GCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCT 55744 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| | |||| || || | ||| || || | |||||||| ||||| ||||||||| Sbjct 55743 GGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATT 55684 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA----CCTTGTTGCTAGAT 11806 ||||| ||| |||||| || |||| || ||| || | || |||||| || ||| Sbjct 55683 CCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGT--CT-GAT 55627 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT---TGTT-TCTATAGC 11862 ||||| | |||||| || || |||||||||| || || | || || || || Sbjct 55626 ATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTA----TTACAGGAATATTCTCCATTGC 55571 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | ||||| | |||||| | |||| | | || || ||||||| ||||||||| Sbjct 55570 CTGGAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATA 55511 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| |||| || || ||||| || ||||| ||||| |||||||||| |||||| Sbjct 55510 CATCTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCT 55451 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 || || || | ||| ||||| |||| || ||||||||||| ||||| | Sbjct 55450 TATTTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGC 55391 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 ||||| ||||| |||| || ||||||| | | || | | | ||| || ||||| Sbjct 55390 AGCAAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCA 55331 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 ||| || || ||||| || || |||||||| | ||||| || |||||||| | Sbjct 55330 GTCAGCTTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATC 55271 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTAGAATCAGA 12222 |||||||||| ||| |||||||||| || || ||||||||||| || ||| | || Sbjct 55270 TTTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATTGTTTGA 55211 Query 12223 CTCTTGAAGAATAGGCTC 12240 ||| || || || ||||| Sbjct 55210 CTCCTGCAGGATTGGCTC 55193 >seq35 Length=104599 Score = 237 bits (262), Expect = 1e-57 Identities = 1167/1835 (64%), Gaps = 42/1835 (2%) Strand=Plus/Minus Query 36822 TTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCAT 36881 ||| |||| || |||||| |||| ||||| || ||| | |||||||||| || ||||| Sbjct 79379 TTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCAT 79320 Query 36882 ACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATC 36941 || || |||| || | || || || || | || |||| || |||||||| || Sbjct 79319 GCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGGTC 79260 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACA--TTTTTGAGATATCTCCCAA 36999 | | | ||||||||||| |||||| | | || |||| ||| || ||| |||||| Sbjct 79259 AACATATGCACCTCTGTCTGCTGCC--TGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 37000 ACCGTTTTATATATTTGTTTTATATTATCTGGTA-AATCTAAATG--TTGAATAGAACCA 37056 || ||||| || | ||||| |||||||| |||| | ||| ||| || || || Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 37057 TTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTAT--TAGTT 37114 | ||| | ||| | ||||| || || | || || | ||| | | ||| | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTC--TGGCCCCCACAGGCCTAAATCTGCTAGAT 79084 Query 37115 CTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATA 37174 | | | | ||| | ||| |||| || || ||||| || | | |||||| || |||| Sbjct 79083 TTTTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATA 79024 Query 37175 TATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAG 37234 |||| || || | |||| | |||||||| | | ||||| || || || || | Sbjct 79023 TATTACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGG 78964 Query 37235 TAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA 37294 | ||||| | || | || | ||||||| | ||||| | | || ||||||| | Sbjct 78963 TTGGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAA 78904 Query 37295 GTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATAC 37354 | || ||| |||||| || | || | |||||||||||| || || || | Sbjct 78903 GACCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTC 78844 Query 37355 CTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGC 37414 | || ||| | ||| | ||||| ||| || || ||||| | | || ||||| Sbjct 78843 CCTTGCTCACAGGACTGCCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTC-- 78786 Query 37415 AACTAGAT---TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 | | ||| || || || || | || || ||||| || ||| | | ||||| | Sbjct 78785 -ATTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTG 78727 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 |||||| | ||| || |||| ||| |||| | || | ||||| || | ||||| | Sbjct 78726 CTGCTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTA 78667 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGA--TC-TAGACGATTCTATCACTGGAT 37588 |||| || ||||| || | || ||| ||||||| || ||| |||| | ||| | Sbjct 78666 CACCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCT---AATGGGT 78610 Query 37589 AATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCA 37648 | | || | ||| || ||||| || || ||||| ||| |||||| | | | | Sbjct 78609 ATTTGTTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTA 78550 Query 37649 ACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGAT 37708 ||| | ||| ||||| | || || | || || | | | || ||| | || | Sbjct 78549 GCTTATTGAAGTTAAATTCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGT 78490 Query 37709 TACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCG 37768 |||| || |||| ||||| | | | | | | |||||| | ||| | || || Sbjct 78489 TACACACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTC 78430 Query 37769 ATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 | || ||| | ||| || ||| ||| | ||||| |||||||| || | Sbjct 78429 CCTTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAA 78370 Query 37829 TATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTT 37888 | ||||| ||| ||| || | ||||| | ||| | ||||| | |||||||| Sbjct 78369 TGTACGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTG 78310 Query 37889 TAACGATC-GCTT-TAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGTTAAAAT 37945 ||| | | ||| | | || | |||| | ||||||| | || ||| | | | ||| | Sbjct 78309 GAACCACCTTCTTCTCAATTCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAAATT 78250 Query 37946 CATTCCCCCATACATCGCATAATCCTGGACATTCG-CAT----GGACACATTAGAGACCA 38000 ||| | || ||| || | | | || | || | ||| || || | ||| | ||| Sbjct 78249 CAT--CTCCGTACTTC---TCGTGCAGGCCTTTTGCCATATTGGGGCAAAATAGCGCCCA 78195 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 || | |||| ||| || | | ||||||||| ||||||||||||| | | || || Sbjct 78194 ATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAA 78135 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 || | | | || |||||| || || ||||||||| || || ||| || ||||| Sbjct 78134 ATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATAT 78075 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGAC-ATTGCTCCTGGTCTTTTATCACCTCCCT 38179 || ||||||||| || ||||| | | || |||| ||| || || |||| |||||||| Sbjct 78074 GTCTCTGTGCCATGGCTCAATATACA-CAACAATTGATCCAGGCCTCTTATTACCTCCCT 78016 Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239 | | || ||| | |||| || | | | ||| | |||||| | ||| ||||| || | Sbjct 78015 GGTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGAAT 77956 Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTA 38299 || | || || || | || | ||| || || || || || | Sbjct 77955 GACCAAAGGTTCCCTTAATGTATGAGCCAGTGCCTCTGATGTTGTGGATGTTCACACCAA 77896 Query 38300 TTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359 | || |||||||| |||||||| | || || || || | ||||| |||| || || | Sbjct 77895 TCCCTCCTGCATGCTTTGATATCATTGCACACTGCTTAAGCGTATTGTATATTCCATCAA 77836 Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACA--TTTGAGGCAATGGAGTTCC 38417 | ||| || || | | || |||||| || |||| | || | |||| ||||| Sbjct 77835 TTGAATCACTCTGCATAGCCAATAAAAAACAGCTGGACAGCTGTGGTGAAATG--GTTCC 77778 Query 38418 GGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGT 38477 ||| || | ||||| | |||||||| || || |||| | | |||||| Sbjct 77777 ACTGTTGAAAAGAGTAGGCGTAGCATGTATAAAGTGCTTAGTAGACATAAGCTCATATGT 77718 Query 38478 TTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATG 38537 || ||| || || || ||| | | || || || | | || ||||| | || Sbjct 77717 TTGTATGGCAGATTCAATGTCATCCTCATGGATTCCCACACTCACTCTCATCCATAAATA 77658 Query 38538 TTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 || || |||||||| ||| ||| || || || || ||||| | | ||| || Sbjct 77657 CTGCGGCCTTTCTATAATTACATTGTTTGACTTTAGAAGGTACGAGCGCTTCAGTGTCTT 77598 Query 38598 TATTCCAAAATAACTATATGAATAATCTCTATCGT 38632 |||||||| ||| | || | | ||||| |||| Sbjct 77597 AATTCCAAAGTAAGAAAATTCAAAGTCTCTCTCGT 77563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523710679840