Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq105 288 1e-72 seq35 214 2e-50 >seq105 Length=68279 Score = 288 bits (318), Expect = 1e-72 Identities = 439/619 (71%), Gaps = 11/619 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || || ||||| || || || ||||| || || | ||||| || || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| ||||| | ||| |||||||| || || || |||||||||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 36333 ||||| ||||| ||||| |||| || || ||| || | | | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||||| | | ||||| || ||||||||||||| ||| || |||| || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || | || |||||||| || ||||| ||||||||||||||||| |||||| | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || ||||||| | ||| | ||| |||| |||||||| || ||||| || ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 ||| || || | ||||| ||||| | | | || |||| |||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 36634 A--TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | ||| | | || || | || |||||||| | ||||| ||| |||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT--TTTGAT 36749 |||||||| ||| || ||||||| | ||||| |||||||||||||||| ||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATTGTTTGA- 55211 Query 36750 TTTTTGCAAGGATTGGTTC 36768 | ||| |||||||| || Sbjct 55210 CTCCTGC-AGGATTGGCTC 55193 >seq35 Length=104599 Score = 214 bits (236), Expect = 2e-50 Identities = 913/1437 (64%), Gaps = 32/1437 (2%) Strand=Plus/Minus Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922 ||||| || || | ||| || |||| ||||| || || |||||||||| || ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982 || || ||||||| || | | | || | || || || ||||| || |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 65042 || | | || || |||||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 65043 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 65099 | |||||| || | | || |||| || || | | | | | || || || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 65100 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 65159 ||| | ||||| | ||||| ||||| ||| | | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 65160 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 65219 | | | || | ||| || | ||| |||||||| || | | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 65220 TTACTGGT-ATACGGTTCCACAG-ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277 |||||||| | || | || || |||||||| ||| | |||||| | ||||| || | Sbjct 79021 TTACTGGTGAAACCCT--CAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGG 78964 Query 65278 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 65337 | ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| | Sbjct 78963 TTGGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAA 78904 Query 65338 GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATAC 65397 || |||| | ||| | || || || || || || || | Sbjct 78903 GACCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTC 78844 Query 65398 CGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456 | || || | | || ||| |||||| |||||||| || | ||||| || |||||| Sbjct 78843 CCTTGCTCACAGGACTG-CCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCA 78785 Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516 ||||| | ||||| | ||||||||||| || || || |||| ||| | Sbjct 78784 TTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCT 78725 Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 |||||| ||| ||||||||||| | ||||| | | ||||||| || || ||| Sbjct 78724 GCTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACA 78665 Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 65636 || || || ||||| | || || ||||||| | | ||||| | | || || | Sbjct 78664 CCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTG 78605 Query 65637 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 65696 || | ||| || ||||| || || ||| || | | || ||| | || ||||| || || Sbjct 78604 TTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTA 78545 Query 65697 AGAAAATCAAATCGCTCATCTATTACAA-ACATGTT--CAATGCAACAGATGCCAGATTA 65753 || | |||| |||| || ||| ||||| | ||||| |||||||| ||| Sbjct 78544 TTGAAGTTAAAT---TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTA 78488 Query 65754 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 65813 || || || | ||||| | ||| | || | | ||||||| || | || || | | Sbjct 78487 CACACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCC 78428 Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 65873 ||||| ||| | ||| || || || |||||| ||||||| || ||||| |||||| Sbjct 78427 TTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATG 78368 Query 65874 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC---- 65929 | || ||| |||||||||| | || | ||| || ||||| | || || Sbjct 78367 TACGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGA 78308 Query 65930 ----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 65985 | || || | || ||||| |||| ||||||| || ||||| ||| | Sbjct 78307 ACCACCTTCTTCTCAAT-----TCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAA 78253 Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCC--AGGACATTCATCCGGACACATCAACGACCA 66043 | || ||||| | | || || || | ||| || || || | | || ||| Sbjct 78252 ATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCA 78195 Query 66044 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA 66103 || ||||| || | |||| |||||||| | ||||| | ||| || ||| || || Sbjct 78194 ATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAA 78135 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 || ||| | || ||| || || || ||||||||| | | ||| | || | | || Sbjct 78134 ATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATAT 78075 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 66223 || ||||| || || | || | | || |||||||| || || |||||||| Sbjct 78074 GTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTG 78015 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 || | || | | ||| || | | ||||||| ||| ||||| || ||||| || Sbjct 78014 GTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171269748240