Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05-
11] 186 sequences; 4,397,606 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq105 288 1e-72
seq35 214 2e-50
>seq105
Length=68279
Score = 288 bits (318), Expect = 1e-72
Identities = 439/619 (71%), Gaps = 11/619 (2%)
Strand=Plus/Minus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || || ||||| || || || ||||| || || | ||||| || || || ||
Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276
|| ||||| ||||| | ||| |||||||| || || || |||||||||||||| |||||
Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688
Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 36333
||||| ||||| ||||| |||| || || ||| || | | | | ||||
Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||||| | | ||||| || ||||||||||||| ||| || |||| || || |
Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568
Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453
|| | |||| ||||| | |||| || | || || || || | | |||||||||
Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508
Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513
|| | || |||||||| || ||||| ||||||||||||||||| |||||| | ||
Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448
Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573
|| ||||||| | ||| | ||| |||| |||||||| || ||||| || ||| ||
Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388
Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633
||| || || | ||||| ||||| | | | || |||| |||| || | ||| ||
Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328
Query 36634 A--TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691
| ||| | | || || | || |||||||| | ||||| ||| |||| |||| | |
Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270
Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT--TTTGAT 36749
|||||||| ||| || ||||||| | ||||| |||||||||||||||| |||||
Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATTGTTTGA- 55211
Query 36750 TTTTTGCAAGGATTGGTTC 36768
| ||| |||||||| ||
Sbjct 55210 CTCCTGC-AGGATTGGCTC 55193
>seq35
Length=104599
Score = 214 bits (236), Expect = 2e-50
Identities = 913/1437 (64%), Gaps = 32/1437 (2%)
Strand=Plus/Minus
Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922
||||| || || | ||| || |||| ||||| || || |||||||||| || |||
Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322
Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982
|| || ||||||| || | | | || | || || || ||||| || ||||||||
Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262
Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 65042
|| | | || || |||||||| ||| | || | | || || |||||||||
Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202
Query 65043 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 65099
| |||||| || | | || |||| || || | | | | | || || || |||||
Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142
Query 65100 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 65159
||| | ||||| | ||||| ||||| ||| | | || | || | |
Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082
Query 65160 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 65219
| | | || | ||| || | ||| |||||||| || | | ||| | ||||| |||
Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022
Query 65220 TTACTGGT-ATACGGTTCCACAG-ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277
|||||||| | || | || || |||||||| ||| | |||||| | ||||| || |
Sbjct 79021 TTACTGGTGAAACCCT--CAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGG 78964
Query 65278 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 65337
| ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| |
Sbjct 78963 TTGGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAA 78904
Query 65338 GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATAC 65397
|| |||| | ||| | || || || || || || || |
Sbjct 78903 GACCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTC 78844
Query 65398 CGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456
| || || | | || ||| |||||| |||||||| || | ||||| || ||||||
Sbjct 78843 CCTTGCTCACAGGACTG-CCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCA 78785
Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516
||||| | ||||| | ||||||||||| || || || |||| ||| |
Sbjct 78784 TTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCT 78725
Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576
|||||| ||| ||||||||||| | ||||| | | ||||||| || || |||
Sbjct 78724 GCTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACA 78665
Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 65636
|| || || ||||| | || || ||||||| | | ||||| | | || || |
Sbjct 78664 CCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTG 78605
Query 65637 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 65696
|| | ||| || ||||| || || ||| || | | || ||| | || ||||| || ||
Sbjct 78604 TTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTA 78545
Query 65697 AGAAAATCAAATCGCTCATCTATTACAA-ACATGTT--CAATGCAACAGATGCCAGATTA 65753
|| | |||| |||| || ||| ||||| | ||||| |||||||| |||
Sbjct 78544 TTGAAGTTAAAT---TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTA 78488
Query 65754 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 65813
|| || || | ||||| | ||| | || | | ||||||| || | || || | |
Sbjct 78487 CACACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCC 78428
Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 65873
||||| ||| | ||| || || || |||||| ||||||| || ||||| ||||||
Sbjct 78427 TTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATG 78368
Query 65874 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC---- 65929
| || ||| |||||||||| | || | ||| || ||||| | || ||
Sbjct 78367 TACGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGA 78308
Query 65930 ----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 65985
| || || | || ||||| |||| ||||||| || ||||| ||| |
Sbjct 78307 ACCACCTTCTTCTCAAT-----TCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAA 78253
Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCC--AGGACATTCATCCGGACACATCAACGACCA 66043
| || ||||| | | || || || | ||| || || || | | || |||
Sbjct 78252 ATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCA 78195
Query 66044 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA 66103
|| ||||| || | |||| |||||||| | ||||| | ||| || ||| || ||
Sbjct 78194 ATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAA 78135
Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163
|| ||| | || ||| || || || ||||||||| | | ||| | || | | ||
Sbjct 78134 ATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATAT 78075
Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 66223
|| ||||| || || | || | | || |||||||| || || ||||||||
Sbjct 78074 GTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTG 78015
Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280
|| | || | | ||| || | | ||||||| ||| ||||| || ||||| ||
Sbjct 78014 GTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658171269748240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |