Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq103 89.7 5e-13 >seq103 Length=70461 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 ||||| ||| |||||||| ||||| || || | ||| || || || |||||| Sbjct 50330 TGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCCTCCAGCTGT 50271 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | | ||| || ||||| ||||| ||||||||||| || ||| Sbjct 50270 TTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGTATCTTT 50211 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | || | |||||| | || || || |||| || | || || || || Sbjct 50210 GCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTTTTACCAGTG 50151 Query 139742 AACGTTTTTACGAATATTTGCATAGCT 139768 | || ||||||||||| ||||| ||| Sbjct 50150 AGTGTCTTTACGAATATCTGCATGGCT 50124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062846651200