Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq105 297 3e-75 seq35 208 1e-48 >seq105 Length=68279 Score = 297 bits (328), Expect = 3e-75 Identities = 423/593 (71%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || || ||||| || || || ||||| || || || ||||| || || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||| | ||| |||||||| || || || |||||||| ||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATG 50135 ||||| ||||| ||||| ||||| || || ||| || | || | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||||| | | ||||| || ||||||||||||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || | || |||||||| || || || ||||||||||||||||| |||||| | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || ||||||| | ||| | |||| |||| |||||||| || ||||| || ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 ||| || || | ||||| ||||| ||| | || || | |||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 50436 A--TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | ||| | | || || | || |||||||| | ||||| ||| |||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 |||||||| ||| || ||||||| | ||||||||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 >seq35 Length=104599 Score = 208 bits (230), Expect = 1e-48 Identities = 686/1062 (65%), Gaps = 11/1062 (1%) Strand=Plus/Minus Query 78742 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGC 78801 ||||| || || | ||| || |||| ||||| || || ||||||||||||| ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 78802 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 78861 || || ||||||| || | | | || | || || || ||||| || |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 78862 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 78921 || | | || || |||||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 78922 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 78978 | |||||| || | | || |||| || || | | | | | || || || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 78979 CCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACT 79038 ||| | ||||| | ||||| |||||| ||| | | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 79039 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 79098 | | | || | ||| || | ||| |||||||| || | | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 79099 TTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTT 79158 |||||||| | || | | |||||| ||| | |||||| | ||||| || ||| Sbjct 79021 TTACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTT 78962 Query 79159 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGA 79218 ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| ||| Sbjct 78961 GGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGA 78902 Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||| ||||| | ||||| || ||| ||| | |||||| || || || || Sbjct 78901 CCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTCCC 78842 Query 79279 TTACTAGCGTATGAT--CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCAC 79336 || || | | || |||| |||| || || || || | ||| | || | |||| Sbjct 78841 TTGCTCAC--AGGACTGCCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCAT 78784 Query 79337 AACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 79396 ||||| | || || | ||||||||||| || || || || | ||| || Sbjct 78783 TTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTG 78724 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 |||| ||| ||||||||||| | ||||| | | ||||||| || || |||| Sbjct 78723 CTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACAC 78664 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 79516 | || || ||||| | || || |||||||| | | ||||| | | || || | | Sbjct 78663 CCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGT 78604 Query 79517 TAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 | | ||| || ||||| || || || || ||| || ||| | || |||||||| || Sbjct 78603 TTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTAT 78544 Query 79577 GAAAATCAAATCGTCCATCTATTACAAACATGTT--CAACGCGACAGATGCCAGATTACA 79634 || | |||| || | | || | ||||| | || | |||||||| ||||| Sbjct 78543 TGAAGTTAAAT--TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACA 78486 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 || || | ||||| | ||| | || | | || |||| || | ||| || | ||| Sbjct 78485 CACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTT 78426 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 || ||| | ||| || || || |||||| ||||||| || ||||| |||||| | Sbjct 78425 GATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTA 78366 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| ||| |||||||||| | || | ||| || ||||| Sbjct 78365 CGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCA 78324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267130025040