Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq105 228 8e-55 >seq105 Length=68279 Score = 228 bits (252), Expect = 8e-55 Identities = 586/884 (66%), Gaps = 20/884 (2%) Strand=Plus/Minus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 ||| ||| |||| || | | |||||||| || | ||| | | |||||| || | Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCT 56031 Query 13642 CCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||||||||| ||||| ||| ||| | | || || || | |||| | | ||||| Sbjct 56030 CCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTA 55971 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 | | ||| || | ||||||||| || || |||| | || | || || ||||||| Sbjct 55970 ACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAG 55911 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 ||||||| | || |||||||| |||||||| || || |||||| | || | Sbjct 55910 AAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCT---AAAACTA 55854 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC--GCAAA 13879 || | | || | ||| | | ||| || || || | ||| || ||||| Sbjct 55853 TTTTCTTGATATTCTTACACT-----TGTTTATGAGGTGAGAATGTAAAAGACAGGCAAA 55799 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| ||||| || |||||||| || || || ||||| || || || | |||||||| Sbjct 55798 GTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCAT 55739 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | |||| || || | ||| || |||| |||||||| || || |||||||||||||| Sbjct 55738 AAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTC 55679 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 || ||||| || | || | ||| |||| | | |||| |||||||| | Sbjct 55678 TACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCACCT 55619 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || ||||| || | | || | || || || | ||||| | Sbjct 55618 AAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAGAA 55559 Query 14120 TTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 | ||| ||| |||| ||||| |||| || || || ||||| |||||||| || | | Sbjct 55558 GTTCTTTTCTGCAGTATCCTTGA--TGTAGGTGTCTATTAGTAAACTATACATCTCTGCG 55501 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 ||||||||||| || || || || || || || ||||| || || ||| ||| Sbjct 55500 TGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACT 55441 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || || ||| ||||| | || |||||||| || || ||||| || ||||| ||| Sbjct 55440 TCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAAT 55381 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGAGTTTTTTCCAATCGGATA 14355 || | || | ||||||| | |||| ||| || || |||| ||| || | | Sbjct 55380 GCAAGTACATAGGAGATAAAGTGT--CTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTT 55323 Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCA-AAAACTAGCGACAGCTTTTTTATAC 14414 || || || | || ||||| || | ||||| || ||| || || || | ||||||| Sbjct 55322 GGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACT-GCCACTGCATCTTTATAC 55264 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||| |||| || || | || ||| || |||| |||||||| Sbjct 55263 ATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCT 55220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726884632400