Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq105 268 9e-67 >seq105 Length=68279 Score = 268 bits (296), Expect = 9e-67 Identities = 597/885 (67%), Gaps = 22/885 (2%) Strand=Plus/Minus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 ||| ||| |||| || | | ||||| || || | ||| | | |||||| || | Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCT 56031 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||||||||||||||| ||||||| | | || || || | |||| | | || || Sbjct 56030 CCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTA 55971 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 | | ||| || | ||||||||| || || |||| | || | || || ||||||| Sbjct 55970 ACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAG 55911 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||||||| | || ||||||||| |||||||| || || ||||| || || | Sbjct 55910 AAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTC---TAAAACTA 55854 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC--GCAAA 13667 | || | || | ||| | | ||| || || || | ||| || ||||| Sbjct 55853 TTTTCTTGATATTCTTACACT-----TGTTTATGAGGTGAGAATGTAAAAGACAGGCAAA 55799 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||| ||||| || |||||||| || || || ||||| || || || | |||||||| Sbjct 55798 GTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCAT 55739 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 | |||| || || | ||| || |||| || |||||||| || |||||||||||||| Sbjct 55738 AAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTC 55679 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || ||||| || | ||| | ||| |||| | | |||| ||||||||| | Sbjct 55678 TACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCACCT 55619 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA-AT 13906 ||||| || | || ||||| || | | || | || ||||| | |||||| | Sbjct 55618 AAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAGAA 55559 Query 13907 GTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 |||| || ||| |||| ||||| |||| || || || ||||| |||||||| || | Sbjct 55558 GTTCTTT-TCTGCAGTATCCTTGA--TGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||||||||||||||| || || || || || |||||||| || || ||| || Sbjct 55501 GTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAAC 55442 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || || ||| ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 55441 TTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAA 55382 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGAGTTTTTTCCAATCGGCT 14142 ||| | || | ||||||| | |||| ||| || || |||| ||| || ||| Sbjct 55381 TGCAAGTACATAGGAGATAAAGTGT--CTCTCATTTGCATTTAGCTTTTCCCAGTCAGCT 55324 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCA-AAAACTAGCGACAGCTTTTTTATA 14201 || || || | || ||||| || | ||||| || ||| || || || | |||||| Sbjct 55323 TGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACT-GCCACTGCATCTTTATA 55265 Query 14202 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 |||| |||| || || | || ||| || |||| |||||||| Sbjct 55264 CATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCT 55220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587687281040