Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq105 279 7e-70 seq35 219 6e-52 >seq105 Length=68279 Score = 279 bits (308), Expect = 7e-70 Identities = 419/593 (71%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || || ||||| || || |||||||| || || | ||||| || || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||| | ||| |||||||| || || || |||||||||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 42240 ||||| ||||| ||||| |||| || || ||| || | | | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||||| | | ||||| || ||||||||||||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 |||| || |||||||| || || || ||||||||||||||||| |||||| | | Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||||| | ||| | |||| |||| ||||| || || ||||| || ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 ||| || || | ||||| ||||| | | | || | | ||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 42541 A--TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 | ||| || || || | || ||||||||| | ||||| ||| ||| |||| | | Sbjct 55327 AGCTTG--GTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 |||||||| ||| |||||||||| | ||||||||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 >seq35 Length=104599 Score = 219 bits (242), Expect = 6e-52 Identities = 909/1432 (63%), Gaps = 26/1432 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || || | ||| || | |||||||| || || |||||||||| || ||||| Sbjct 79379 TTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCAT 79320 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 || ||||||| || | || | || | |||||||| ||||||||||||||||| || Sbjct 79319 GCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGGTC 79260 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 | | || || |||||||| ||| | || | | || || |||||||||| Sbjct 79259 AACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAAAC 79200 Query 71007 AGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACC 71063 |||||| || | | || |||| || || | | | | | || || || ||||| | Sbjct 79199 AGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCTTC 79140 Query 71064 ATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCT 71123 || ||||||| | || || |||||| ||| | | || | || | | | Sbjct 79139 ATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTTTT 79080 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 | | |||| ||| || | ||| |||||||| || | | ||| | ||||| ||||| Sbjct 79079 TACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATATT 79020 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 |||||| | || | |||||||| ||| | |||||| | ||||| || || || Sbjct 79019 ACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTTGG 78960 Query 71244 CATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGA 71303 ||| | ||||| || | |||||||| | |||||| | ||| || | ||| ||| Sbjct 78959 CATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGACC 78900 Query 71304 TTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTT 71363 |||| | ||| | || || || || || || || Sbjct 78899 AGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTCCCTT 78840 Query 71364 ACTAGCGTATGAT--CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || | | || |||||||||| |||||||| || | || | || |||||| Sbjct 78839 GCTCAC--AGGACTGCCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCATTT 78782 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 71481 ||||| | || ||| | ||||||||||| || || || || | ||| |||| Sbjct 78781 GATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTGCT 78722 Query 71482 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCA 71541 ||| ||| ||||||||||| | ||||| | | ||||||| || || || || Sbjct 78721 TCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACACCC 78662 Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 || || ||||| | ||| || |||||||| | | ||||| | | || || | || Sbjct 78661 ATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTTT 78602 Query 71602 ATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGA 71661 | ||| || ||||| || || ||| || ||| || ||| | || |||||||| || Sbjct 78601 ACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTATTG 78542 Query 71662 AAATCAAATCTCCCATCTATTACAA-ACACGTT-CAAG-GCAACAGATGCCAGATTACAA 71718 || | |||| ||| || ||| | ||| ||| |||| |||||||| ||||| Sbjct 78541 AAGTTAAAT---TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACAC 78485 Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 || || | ||||| | ||| | || | | ||| |||| || | || || | |||| Sbjct 78484 ACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTTG 78425 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 || ||| | ||| || || || |||||| ||||||| || ||||| ||||| || Sbjct 78424 ATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTAC 78365 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 71898 || ||| |||||||||| | || | ||| || ||||| | || || | Sbjct 78364 GGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAACC 78305 Query 71899 ATATTCTTGT---ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCT 71955 | ||||| | ||||| |||| ||||||| ||| ||| | ||| || || ||| Sbjct 78304 ACCTTCTTCTCAATTCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAAATTCATCT 78245 Query 71956 CCCCAAGCATTGTCTAATCCAGGACATT-----CATTCGGACACATCAATGACCACTCTC 72010 || | | | ||| | |||| | || ||| || || | | | ||| || | Sbjct 78244 CC----GTACT-TCTCGTGCAGGCCTTTTGCCATATTGGGGCAAAATAGCGCCCAATCCC 78190 Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 | || || | |||| |||||||| | ||||| | ||| || ||| || | || || Sbjct 78189 CGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAAATTTC 78130 Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130 | | || || || || || ||||||||| | | ||| | || | | || || Sbjct 78129 TTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATATGTCTC 78070 Query 72131 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTA 72190 ||||| || || | || | | || ||| |||| || || |||||||| || | Sbjct 78069 TGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTGGTCAA 78010 Query 72191 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || | | ||| || | | ||||||| ||| ||||| || ||||| || Sbjct 78009 CATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137639601360