Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq103 120 3e-22 seq106 91.5 1e-13 >seq103 Length=70461 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || | |||||||||| |||||||||||||||||| || | ||| || || Sbjct 50339 AAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCC 50280 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || || ||||| || ||| |||| | | ||| || ||||| ||||| ||||||||||| Sbjct 50279 TCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCT 50220 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 || ||| ||||| | || | ||||| | ||||||||||||| || | || Sbjct 50219 TGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTT 50160 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || || | ||| ||||||||||| ||||| ||| Sbjct 50159 TTACCAGTGAGTGTCTTTACGAATATCTGCATGGCT 50124 >seq106 Length=63987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| |||||||| || ||| |||| | | ||| || |||||||| || ||||| ||| Sbjct 37601 TCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTG 37542 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| ||||| | || | ||||| | ||||||||||| | || | Sbjct 37541 TCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTAATT 37482 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||||||| ||||| ||||| Sbjct 37481 GTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013221191520