Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq105 250 2e-61 >seq105 Length=68279 Score = 250 bits (276), Expect = 2e-61 Identities = 486/705 (69%), Gaps = 16/705 (2%) Strand=Plus/Minus Query 12884 TCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTC 12943 ||||| || |||| ||||| | | ||||| |||||||||||||| || ||| | Sbjct 56067 TCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCTCCATAAAATCGAATGGGTTTGTT 56008 Query 12944 GAACAATAGTATTTTT-TACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTAT 13002 | ||| |||| | || || | | | || || | || || |||||||| || Sbjct 56007 GTGTTGTAGACCTTTTCTTCATT-TAGTGCAATTAGTAACCGATCTGCCACAAACTCAAT 55949 Query 13003 GTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAA 13062 |||||| ||| | || |||| || |||||||| ||||| | || || ||||| Sbjct 55948 GTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAAACAGGAAGTGCATCAGTTAA 55889 Query 13063 AAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTA--CGTTCTCTAAT 13120 ||| | |||||| || |||||||| || | |||||| | |||| || | | | || | Sbjct 55888 AAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTT-TCTTGATATTCTTACACTTGT 55830 Query 13121 GGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCT 13180 | || ||| | ||| |||| | ||| ||||| |||||||| | |||||||||| Sbjct 55829 TTATGAGGTGAGA-ATG--TAAA----AGACAGGCAAAGTCACAGTGAAGTCCTTCATCT 55777 Query 13181 CTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAA 13240 || || || |||||||| || || || ||||| |||||||| |||| || |||| ||| Sbjct 55776 CTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAGGCCTCTCTTCTTAAGCCAG 55717 Query 13241 AATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC 13300 || || | ||||| || || || || |||||||| || || |||||| || | | | Sbjct 55716 AAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTACACATGCAAAAGCAACTAGC 55657 Query 13301 CTTTCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTG-CTTTTT 13358 || || || | || | | | ||| ||||||| | |||||||| || ||| || Sbjct 55656 CTGTCTGCAAAGCTA-GACTCCTTGTCTGATATCCACCTAAGGGCCCAGTCTGCCTTCTT 55598 Query 13359 GTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTA 13418 |||| ||| ||||| || ||||| | ||||| | || ||||| | | || Sbjct 55597 TTTTATTACAG-GAATATTCTCCATTGCCTGGAATAAGAAGTTCTTTTCTGCAGTATCCT 55539 Query 13419 AAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 || || || ||||| | ||| |||||||| |||| || || ||||| ||| |||| Sbjct 55538 TGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTGTATGTTTTCTATCATAATTT 55479 Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA 13538 |||| || || |||||||| ||||| || |||||||| || ||| ||||| ||| Sbjct 55478 GGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACTTCTGAAGCAAACCTTTCAACTA 55419 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA 13583 ||||||| || || || || || |||||||| || ||||||| Sbjct 55418 AGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGCAAGTA 55374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981423016772