Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq105 251 2e-61 seq106 223 8e-53 seq109 210 5e-49 seq103 205 2e-47 >seq105 Length=68279 Score = 251 bits (278), Expect = 2e-61 Identities = 418/598 (70%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757 |||||||||| || || |||||| ||||| |||||| ||| ||||| ||| | || | Sbjct 55218 ATAGATTTGTTATTTTCCCAATAGAGCATCATGATATTTGGGCAATGTATAAAGATGCAG 55277 Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA 268817 | || || ||||||| ||||||||| || |||| ||||| | || ||| ||| Sbjct 55278 TGGCAGTATTCTGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGAAA 55337 Query 268818 ATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTG 268877 | |||| || | || ||| ||||| || ||| | ||||| || ||||| | | Sbjct 55338 AGCTAAATGCAAATGAGAGACACTTTATCTCCTATGTACTTGCATTCTTTGCTGCCTCAG 55397 Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAG 268937 |||| || || || ||||| |||| || | ||| | ||| || || || || | Sbjct 55398 ATGGAATTGTAAATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCGAGG 55457 Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997 | |||||||| ||||||||||| || |||||||| || || |||||||||| ||| Sbjct 55458 CAAGATGTTTCTACGGATTCCAAATTATGATAGAAAACATACACGCAGAGATGTATAGTT 55517 Query 268998 TATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT-G 269056 || ||||||| || || || | |||| |||||||| |||| | || | Sbjct 55518 TACTAATAGACACCTACATCAAGGATACTGCAGAAAAGAACTTCTTATTCCAGGCAATGG 55577 Query 269057 AGAACTATGGACTGT-GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG 269115 |||| ||| |||| | | ||| || | || ||||| || | |||||| || | Sbjct 55578 AGAA-TAT-TCCTGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATATCAGACAA 55635 Query 269116 CGCGCCT---TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 | | || | | ||| ||| ||||||||||||| |||||| || |||||||| || Sbjct 55636 GGAGTCTAGCTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTTCTC 55695 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || || ||||| | || || ||| | ||||| ||||||||||||||||| | ||||| Sbjct 55696 TGGATCATTTGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTACTTT 55755 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||||||| |||| ||||| || ||||| | ||||| ||||| || ||| | ||| Sbjct 55756 CTCTAACGAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGCCTGTCTTTTA 55813 >seq106 Length=63987 Score = 223 bits (246), Expect = 8e-53 Identities = 189/230 (82%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT-TCTTTCTGAATATTATAGTCAG 104390 ||| ||||| || || ||||| ||||| |||| | | || ||||| || || ||||||| Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATG-AATGGTGCTCTCCTTCTGGATGTTGTAGTCAG 37616 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || ||||| || ||||| ||||||||||| ||||| |||| || ||||| || |||| Sbjct 37615 AAAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAG 37556 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | |||||||| || ||||| ||||||||||||||||| |||| || || || ||||||| Sbjct 37555 GGATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTA 37496 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 37495 CTTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq109 Length=56162 Score = 210 bits (232), Expect = 5e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||||||||| || | ||||| ||||| | ||| || ||||| || |||||||||| Sbjct 24989 TTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAG 25048 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || || || |||||||| |||||||| ||||| ||||| |||||||| || || | Sbjct 25049 AAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTG 25108 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 |||| |||||||||||||| |||||||| || ||||| |||| | || || ||||||| Sbjct 25109 GTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTA 25168 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 25169 CTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq103 Length=70461 Score = 205 bits (226), Expect = 2e-47 Identities = 187/236 (79%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| ||||| || || | || ||||| | |||| |||||| || || || Sbjct 50363 TTCTTTCCTCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTG 50304 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| || ||||| || || || || |||||||| ||||| |||| || ||||| Sbjct 50303 TAGTCAGAAAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGG 50244 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || |||||||||||||| || || ||||||||||||||||| |||| || || || Sbjct 50243 TCGGGTGGTATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTT 50184 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| || |||||||| ||||| ||||| ||||||||||| Sbjct 50183 GGTTCTACTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395656073688