Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq103 150 2e-31 >seq103 Length=70461 Score = 150 bits (166), Expect = 2e-31 Identities = 269/390 (69%), Gaps = 7/390 (2%) Strand=Plus/Minus Query 164604 TAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGT--GAGTCAGAAGCTAAT 164661 ||||||||| || || |||||| || ||||||| ||||| || |||| || || || Sbjct 54812 TAAAATTGTGAACGGGCCTGAAATACTGAACAAGTATGTTGGGCAGAGTGAGGAG--AAC 54755 Query 164662 GTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAA 164721 | ||||| |||||| |||| || || |||| | ||| || || | ||| | Sbjct 54754 ATAAGAAAATTGTTTGAGGACGCAGAGAAAGACTATAAGCAATACGGCGATGAGAGTGCA 54695 Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG---TGATAAT 164778 | || | || | ||||||||||| ||||| |||| || | | || | |||| Sbjct 54694 CTGCACATAATAATATTTGATGAGATTGATGCGATTTGTAAGAGCAGAGGGTCTTCTAAT 54635 Query 164779 ATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTA 164838 || ||| |||||||| || ||||||| |||||||||||||| || || || Sbjct 54634 GGCGTTGGTGACCAGGTGGTTAACCAACTGCTTTCAAAAATAGATGGTGTGGAGTCGTTG 54575 Query 164839 AATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTA 164898 ||||||||| | | | || ||||| ||| || ||||||||||||||||| |||||| Sbjct 54574 AATAATATTCTTGTGATTGGAATGACTAACAGAGTGGATTTAATTGATGATGCATTATTA 54515 Query 164899 CGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTT 164958 |||| ||||| || || | | || |||||| | || || ||| |||| | || Sbjct 54514 AGACCCGGTCGGTTTGAGATACACATTGAAATATCCCTGCCAGATGAAGCAGGAAGACTG 54455 Query 164959 CAAATTTTAAAAGTTCATGTGGCTAAAATG 164988 |||| ||||| ||||| | ||||||| Sbjct 54454 GAAATCTTAAAGATTCATACGAATAAAATG 54425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870614597600