Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq103 120 3e-22 seq106 96.9 3e-15 seq109 89.7 5e-13 >seq103 Length=70461 Score = 120 bits (132), Expect = 3e-22 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||||| || || || | || | ||| ||| ||||| | ||| || || Sbjct 50356 CTCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAG 50297 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | |||||| |||||||||||||||||| |||||||||||||||| || || || Sbjct 50296 --AAAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGG 50239 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || ||||||||||| | || ||||| || || | | |||||| | ||| | Sbjct 50238 TGGTATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCA-CTTGGTT 50180 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || |||| || |||||||| ||||| || || || || || ||||||||| Sbjct 50179 CTACTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCATG 50127 >seq106 Length=63987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| |||||||| |||||||||||||||| || || ||||| || ||||| || Sbjct 37602 ATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTT 37543 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || ||||| || || | | |||||| | ||| || || || | || | Sbjct 37542 GTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCA-CTTGGTTCTACTTCCAGGGTAA 37484 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| || ||||| ||||| |||||||| Sbjct 37483 TTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq109 Length=56162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 94776 ACACT-CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 ||||| || ||||||| ||||| || | || | ||| ||||| || | |||||| Sbjct 24985 ACACTTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAG 25044 Query 94835 TCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || | ||||| | ||| || ||||||||||| ||||||||| ||| || || | Sbjct 25045 TCAG--AAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGT 25102 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || |||||||| || | || ||||||||||| | | | |||| | | Sbjct 25103 CGGGTGGTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCA-CTT 25161 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || || || ||||| || || ||||| || |||||||| Sbjct 25162 GGTTCTACTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290157722960