Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq105 214 2e-50 >seq105 Length=68279 Score = 214 bits (236), Expect = 2e-50 Identities = 591/899 (66%), Gaps = 26/899 (3%) Strand=Plus/Minus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC-CAATGATATAGAT 21244 ||| ||| |||| || | | || || ||||||| |||| |||| || ||| || Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTG-CTTTTCTTCGCAGTGAAATTAGC 56032 Query 21245 TCCATAAAATCAAATGGATTT--TCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||||||||| ||||| ||| | | | || | |||| || | ||| | || Sbjct 56031 TCCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTC--ATTTAGTGCAATTA 55974 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 ||| | |||||| ||||| || || || || ||||| | || | || || || || | Sbjct 55973 GTAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTA 55914 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAA 21419 | |||||||| || | || ||||| |||||| || || || || ||| | Sbjct 55913 AAGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTA 55854 Query 21420 TTATATTTATTATCCTAGA--TGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 || | || || || || | ||| || | || | ||| |||| | ||| Sbjct 55853 TTTTCTTGATATTCTTACACTTGTT-TATGAGGTGAGAATG------TAAA----AGACA 55805 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| ||||| || | |||||||| || || || | || ||||| || || | ||| Sbjct 55804 GGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACC 55745 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | |||||||| || | ||| || ||||| ||||||| ||| || ||||| || Sbjct 55744 TGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATAT 55685 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||||| || ||||| ||||||| | || | | |||| || || || |||| Sbjct 55684 TCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATAT 55625 Query 21658 CCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||| | ||||| | |||||| || |||| |||| ||| | || || || | | Sbjct 55624 CCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGG-AATATTCTCCATTGCCTGGA 55566 Query 21717 A-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 | |||| | || ||||| | ||| | ||| ||||||||| Sbjct 55565 ATAAGAAG-TTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATC 55507 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 || | ||||| ||||||||| || || |||||||| |||||||||||||| | Sbjct 55506 TCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATT 55447 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||| || ||| ||| | || | | |||||||||||||| |||||||| ||| ||| Sbjct 55446 TGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCA 55387 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCT 21955 || ||||| | || || ||||| | || || || | ||| |||| ||| || Sbjct 55386 AAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCA 55327 Query 21956 AATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTA 22015 | || ||||| || || |||||||| | ||||| || || | || | |||| Sbjct 55326 GCTTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTA 55267 Query 22016 TACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTATTTGATTC 22074 ||||| ||| ||||||| || |||||| || || ||||| || || ||||| || Sbjct 55266 TACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATTGTTTGACTC 55208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899563330640