Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq105 269 3e-67 seq35 192 7e-44 >seq105 Length=68279 Score = 269 bits (298), Expect = 3e-67 Identities = 417/593 (70%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || || ||||| || || || ||||| || || || ||||| || || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| | ||| |||||||| || || || || ||||||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATG 33479 ||||| ||||| ||||| |||| || || ||| || | | | | |||| Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||||| | | ||||| || ||||||||||||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || | |||| ||||| | |||| || | || || || || | | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || | || |||||||| || || || ||||||||||||||||| |||||| | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||||| | ||| | ||| | || |||||||| || ||||| || ||| || Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33779 ||| || || | ||||| ||||| | | | || | || |||| || | ||| || Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 33780 A--TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | ||| | | || || | || |||||||| | ||||| ||| |||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 |||||||| ||| || |||| || | ||||||||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 >seq35 Length=104599 Score = 192 bits (212), Expect = 7e-44 Identities = 906/1435 (63%), Gaps = 28/1435 (2%) Strand=Plus/Minus Query 62019 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62078 ||||| || || | ||| || |||| ||||| || || |||||||||| || ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 62079 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62138 || || ||||||| || | | | || | || || || ||||| || |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 62139 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 62198 || | | || || |||||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 62199 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 62255 | |||||| || | | || |||| || || | | | | | || || || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 62256 CCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACT 62315 ||| | ||||| | ||||| ||||| ||| | | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 62316 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62375 | | | || | ||| || | ||| |||||||| || | | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 62376 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62435 |||||||| | || | |||||||| ||| | |||||| | ||||| || || Sbjct 79021 TTACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTT 78962 Query 62436 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGA 62495 ||||| | ||||| || |||||||||| | ||| | | ||| || | ||| ||| Sbjct 78961 GGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGA 78902 Query 62496 GGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCG 62555 |||| | ||| | || || || || || || || || Sbjct 78901 CCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTCCC 78842 Query 62556 TTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACA 62614 || || | | || ||| |||||| |||||||| || | ||||| || |||||| Sbjct 78841 TTGCTCACAGGACTG-CCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCATT 78783 Query 62615 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC 62674 ||||| | ||||| | ||||||||||| || || || |||| ||| ||| Sbjct 78782 TGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTGC 78723 Query 62675 TTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACC 62734 |||| ||| ||||||||||| | ||||| | | || |||| || || ||||| Sbjct 78722 TTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACACC 78663 Query 62735 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 62794 || || ||||| | || || ||||||| | | ||||| | | || || | || Sbjct 78662 CATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTT 78603 Query 62795 AATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG 62854 | ||| || ||||| || || ||| || | | || ||| | || ||||| || || Sbjct 78602 TACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTATT 78543 Query 62855 AAAATCAAATCGCCCATCTATTACAA-ACATGTT-CAAG-GCAACAGATGCCAGATTACA 62911 || | |||| ||| || ||| ||||| ||| |||| |||||||| ||||| Sbjct 78542 GAAGTTAAAT---TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACA 78486 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 || || | ||||| | ||| | || | | ||||||| || | || || | ||| Sbjct 78485 CACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTT 78426 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| ||| | ||| || || || |||||| ||||||| || ||||| |||||| | Sbjct 78425 GATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTA 78366 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC------ 63085 || ||| |||||||||| | || | ||| || ||||| | || || Sbjct 78365 CGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAAC 78306 Query 63086 --CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAAC 63143 | || || | || |||| |||| ||||||| || ||||| ||| || Sbjct 78305 CACCTTCTTCTCAAT-----TCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAAAT 78251 Query 63144 TCGTCTCCCCAAACATTGTCCAATCC--AGGACATTCATCCGGACACATCAACGACCACT 63201 || ||||| | | || || || | ||| || || || | | || ||| | Sbjct 78250 TCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCAAT 78193 Query 63202 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261 | ||||| || | |||| |||||||| | ||||| | ||| || ||| || | || Sbjct 78192 CCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAAAT 78133 Query 63262 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63321 ||| | || ||| || || || ||||||||| | | ||| | || | | || | Sbjct 78132 TTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATATGT 78073 Query 63322 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63381 | ||||| || || | || | | || |||||||| || || |||||||| | Sbjct 78072 CTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTGGT 78013 Query 63382 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 | | || | | ||| || | | ||||||| ||| ||||| || || ||||| Sbjct 78012 CAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945751647760