Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq165 104 6e-17 >seq165 Length=118933 Score = 104 bits (114), Expect = 6e-17 Identities = 223/325 (69%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 ||| | |||||| || ||| ||||||| | || ||| | || ||||||||||| ||||| Sbjct 85724 AGAGGATGATCTTGGTCCAATTTACGGGTACCAGTGGAGACATTTTGGTGCAGAGTACAA 85783 Query 111545 AACCATGC----ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTG 111600 |||| ||| | |||| | | || | || | ||| || ||| | | || |||| Sbjct 85784 AACC-TGCGAGGATGACTATTCTAAT---AAAGGCATTGACCAGTTAAACCAAGTGATTG 85839 Query 111601 ATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | |||||| ||| || |||| ||| || || ||| | |||||||||| || || Sbjct 85840 A-GGAATTAAAAACAAATCCAAACAGTCGCCGTATGATTGTATGTGCATGGAATCC--AT 85896 Query 111660 GC-AT-TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG 111717 || || | || | ||||| ||||| ||||| ||| | | | |||||| |||| Sbjct 85897 GCGATCTAGACCAGATGGCTCTTCCTCCATGCCATGTCTTATTCCAGTTCGTTGTAGTAA 85956 Query 111718 ACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGT 111777 | || | ||| ||| | || || |||||| |||| | || || || || || | Sbjct 85957 ATGGAAAGCTAAACTGCATGTTATACCAAAGATCTGGTGATGTAGGGCTAGGAGTGCCTT 86016 Query 111778 TTAATATTGCAAGTTACGCACTACT 111802 |||||||||||||||| || ||||| Sbjct 86017 TTAATATTGCAAGTTATGCCCTACT 86041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350493945452