Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq103 123 2e-23 seq106 111 1e-19 seq109 82.4 7e-11 >seq103 Length=70461 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| ||| | ||||| ||| | ||||| | ||||| || | | Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || ||| |||||| ||||||||||| ||||| ||||| ||| Sbjct 50188 GACACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAA 50247 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | || | | || || || || || |||| |||| | || || ||| Sbjct 50248 CAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAAC 50307 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||||||| |||||||||| | || |||||| ||||||||||| Sbjct 50308 ATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGA 50355 >seq106 Length=63987 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||||||| | ||||| || | |||||| | ||||| || | | Sbjct 37446 AATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAG 37505 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || ||| |||||| ||||| ||||| || |||||||| || Sbjct 37506 TGACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCA 37565 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | | || || ||||| ||||||| |||| | | || || || Sbjct 37566 ACAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAA 37625 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || |||||| | || | ||| ||||||||||| Sbjct 37626 CATCCAGAAGGAGAGCACCATTCATCTTGTACTGAGACTGAGAGGAGGA 37674 >seq109 Length=56162 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | ||||| | ||||| || | | Sbjct 25217 ATGCAGATATTCGTGAAGACACTCACTGGGAAGACAATTACACTGGAAGTAGAACCAAGT 25158 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | ||||| |||||| || |||||||| ||||| ||||| ||| Sbjct 25157 GACTCAATAGAGAATGTCAAGGCAAAGATACAGGATAAAGAAGGGATACCACCCGACCAA 25098 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || || || || ||||||| || | | || |||||| Sbjct 25097 CAGAGACTAATCTTTGCAGGAAAACAGCTAGAAGATGGAAGGACACTTTCTGACTATAAC 25038 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || ||| |||||| | || | || ||||||| ||| Sbjct 25037 ATACAGAAGGAGAGTACGATTCATCTTGTACTGCGACTGAGAGGGGGA 24990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935025388830