Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq106 107 1e-18 seq109 104 2e-17 seq103 100 2e-16 seq147 87.8 1e-12 seq145 87.8 1e-12 seq142 87.8 1e-12 >seq106 Length=63987 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| | || || | ||||| ||||||||||| || || ||||| ||||| Sbjct 37673 CCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAA 37614 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | ||||||||| ||||| |||| | |||||| |||| ||| Sbjct 37613 AGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGG 37554 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || ||| || ||||||| | || || | ||| ||| Sbjct 37553 ATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACT 37494 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || ||||| || | ||||| || ||||||||||| Sbjct 37493 TCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq109 Length=56162 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| |||| || | ||||| || |||||||| || || || || ||||| Sbjct 24991 CCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAA 25050 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || |||| |||||||| ||||| ||||| | ||||| |||| || Sbjct 25051 AGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGT 25110 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| ||| || ||| ||| ||||||| | | || | ||| ||| Sbjct 25111 ATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACT 25170 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||| || || || || | || ||||||||||||||||| Sbjct 25171 TCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq103 Length=70461 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| | || || | ||||| || || || ||||| || ||||| ||||| Sbjct 50354 CCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAA 50295 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | |||||||| ||||| |||| | |||||| |||| || Sbjct 50294 AGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGT 50235 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| || ||| || ||||||| | || || | ||| ||| Sbjct 50234 ATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACT 50175 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||| |||||||| || | || || ||||||||||||||| Sbjct 50174 TCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCATG 50127 >seq147 Length=6404 Score = 87.8 bits (96), Expect = 1e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||| | | || ||||| || ||||||||| Sbjct 5022 GCCCGTTCCCCTGGCTGTGGTTTCGCCGGCG-GCAGGTAGGGACAGCGGGAATCTCGTTC 4964 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 4963 GTCCATTCATGCGCGTCACTAATTAGATGACGA 4931 >seq145 Length=6640 Score = 87.8 bits (96), Expect = 1e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||| | | || ||||| || ||||||||| Sbjct 1619 GCCCGTTCCCCTGGCTGTGGTTTCGCCGGCG-GCAGGTAGGGACAGCGGGAATCTCGTTC 1677 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 1678 GTCCATTCATGCGCGTCACTAATTAGATGACGA 1710 >seq142 Length=6948 Score = 87.8 bits (96), Expect = 1e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||| | | || ||||| || ||||||||| Sbjct 5022 GCCCGTTCCCCTGGCTGTGGTTTCGCCGGCG-GCAGGTAGGGACAGCGGGAATCTCGTTC 4964 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 4963 GTCCATTCATGCGCGTCACTAATTAGATGACGA 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946440716566