Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq103 98.7 9e-16 >seq103 Length=70461 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| |||||||| | || |||||| |||| ||| | ||||| || | | Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || ||||||| | || ||||||||||| || ||||| ||| Sbjct 50188 GACACAATAGAG--AATGTAAAAGCAAAGATACAA-GACAAAGAAGGAATACCACCCGAC 50244 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || ||||| | || |||| | || | || ||| Sbjct 50245 CAACAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTAC 50304 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || ||||||||| || | ||| | || |||| || ||||||||| Sbjct 50305 AACATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGA 50355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327017699590