Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05-
11] 186 sequences; 4,397,606 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq103 98.7 9e-16
>seq103
Length=70461
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| |||||||| | || |||||| |||| ||| | ||||| || | |
Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || ||||||| | || ||||||||||| || ||||| |||
Sbjct 50188 GACACAATAGAG--AATGTAAAAGCAAAGATACAA-GACAAAGAAGGAATACCACCCGAC 50244
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| | | || ||||| || ||||| | || |||| | || | || |||
Sbjct 50245 CAACAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTAC 50304
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|| || ||||||||| || | ||| | || |||| || |||||||||
Sbjct 50305 AACATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGA 50355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327017699590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |