Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq105 174 2e-38 >seq105 Length=68279 Score = 174 bits (192), Expect = 2e-38 Identities = 506/765 (66%), Gaps = 12/765 (2%) Strand=Plus/Minus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||| | ||| || ||||| || |||||||| |||| | || | || || |||| | Sbjct 55972 TAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAA 55913 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||||| || || || || || || ||||| || || |||| || ||| | || Sbjct 55912 AGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT 55853 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 || | || | | || | | |||| || | | | ||| ||| | | || ||||| Sbjct 55852 TT-TCTTGATATTCT-TACACTTGTTTATG-AGGTGAGAAT-GTAAAAGA--CAGGCAAA 55799 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 ||| || | ||||| |||| || | |||| ||| || ||| || | |||||| | Sbjct 55798 GTCACAGTGAAGTCCTTCATCTC-TGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCA 55740 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || |||| ||||| ||||| || ||||| ||||| ||||| || ||||| || | Sbjct 55739 TAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCT 55680 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCAT 93277 | || |||||| || || | | || ||||| | | || ||| | ||||| Sbjct 55679 CTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGAT-ATCCAC 55621 Query 93278 TTTAAAGCCCAATCGGCTTT-TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | | ||||| || || || ||| ||| |||| || | | || || || | |||| Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAA 55562 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | | | || | | ||| ||||| || || |||| | | |||||| || | Sbjct 55561 GAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || | || || || |||||||||||||||||||||||| || || | || || || Sbjct 55501 GTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAAC 55442 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || ||| || || || | |||||||| || || ||||| || || ||||| || Sbjct 55441 TTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAA 55382 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | || || ||||| ||| |||||| | || ||||| ||||| || | | | Sbjct 55381 TGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTG 55322 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || ||||| | || |||||||| ||||||| || ||| |||| | ||| ||||| Sbjct 55321 GTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACAT 55262 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATT 93681 |||| || || |||| | ||||| || || ||||| | ||| Sbjct 55261 TGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859505298640