Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq109 170 4e-37 seq103 165 2e-35 seq106 147 4e-30 >seq109 Length=56162 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| ||| | || | ||| ||| || || |||||||| || | Sbjct 24989 TTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAG 25048 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | |||||||| |||||||||| ||| || || || || || ||||| ||||||||||||| Sbjct 25049 AAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTG 25108 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| || || || |||||||||||||| ||| || | ||| || ||||| Sbjct 25109 GTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTA 25168 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || || || ||||| ||||| |||||||||||||| Sbjct 25169 CTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq103 Length=70461 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 |||||||| ||||| || || || ||||| || ||||| || | ||| || || || || Sbjct 50318 TCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAG 50259 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || | |||||||||||||||||| || ||||| |||||||| |||||||| || || | Sbjct 50258 ATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTC 50199 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || || ||||| || ||||||||| | || |||||||| || ||||| ||||| ||| Sbjct 50198 TCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACG 50139 Query 68451 AATATCTGCAT 68461 ||||||||||| Sbjct 50138 AATATCTGCAT 50128 >seq106 Length=63987 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | || | || ||| | || | ||| ||| || |||||||| || || || Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 37615 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || || |||||||| | || || || || || || | ||||||||||||||| || Sbjct 37614 AAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGG 37555 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || ||||||||||| || |||||||| || || ||| || ||||| || |||||| Sbjct 37554 GATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 37495 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||| || || || || ||||| || || || |||||||||||| Sbjct 37494 TTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620257227920