Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq105 104 4e-17 seq35 84.2 4e-11 >seq105 Length=68279 Score = 104 bits (114), Expect = 4e-17 Identities = 241/358 (67%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| | || |||||||| ||||| || ||||| ||| | ||| | ||| |||| Sbjct 55454 GAGGCAAGATGTTTCTACGGATTCCAAATTATGATAGAAAACATACACGCAGAGATGTAT 55513 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 ||| | |||| |||||| |||| | | || ||| | ||| |||| Sbjct 55514 AGTTTACTAATAGACACCTACATCAAGGATACTGCAGAAAAGAACTTCTTATTCCAGGCA 55573 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 ||||||| || || || || |||||||| |||||||| || | ||||| || Sbjct 55574 ATGGAGAATATTCCTGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATATC-AGA 55632 Query 42681 CCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 | | | | | || | || ||||| || || ||| | || ||||| || ||||| Sbjct 55633 CAAGGAGTCTAGCTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTT 55692 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCA 42798 ||| || | || || || || |||||||| ||| ||| ||| | ||||| || || | Sbjct 55693 CTCTGGATCATTTGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTT-ATGCCAGGTCTTA 55751 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||||| ||||| || |||||||| || || || || || | ||||||||||| || Sbjct 55752 CTTTCTCTAACGAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGCCTGTCT 55809 >seq35 Length=104599 Score = 84.2 bits (92), Expect = 4e-11 Identities = 215/325 (66%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | || | || |||| ||| || | ||| || | ||| || | ||| Sbjct 78197 CCAATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAA 78138 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | | || | |||| || ||| || || ||||| |||| || ||||||||||| Sbjct 78137 CAAATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAA 78078 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 | ||| |||||| ||||| || || ||| | | | || |||| ||| || ||||| Sbjct 78077 TATGTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCC 78018 Query 245164 CTGGTCCACCATCCTCTCGAG-CGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||||| || ||| || | | || | || | | ||| |||| | ||| || || | Sbjct 78017 CTGGT-CAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTG 77959 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 | || || ||| ||||| ||||| | ||| |||| |||| |||| |||| || | Sbjct 77958 AATGACCAAAGGTTCCCTTAATGTATGAGCCAGTGCCTCTGATGTTGTGGATGTTCACAC 77899 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGAT 245307 | | || || || ||||| || || Sbjct 77898 CAATCCCTCCTGCATGCTTTGATAT 77874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337004411360