Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq109 168 2e-36 seq106 147 5e-30 seq103 136 9e-27 >seq109 Length=56162 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| ||||| ||||||||||| || || || || || |||||||| | || || | | Sbjct 25000 AGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTCCTT 25059 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||||| ||||||||||| ||||| || | |||||| ||| || |||||| Sbjct 25060 CCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCTTCT 25119 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 |||||||| || || || || || || ||||| || || || | ||||||||| || || Sbjct 25120 TTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACTTCCAGTGTA 25179 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || || ||||| |||||||||||||| Sbjct 25180 ATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq106 Length=63987 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| ||||| |||||||| ||||| || || ||||| || ||||| | || || | | Sbjct 37664 AGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTT 37605 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | |||||||||||| ||||| | | ||||| ||||||||||| Sbjct 37604 CCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCC 37545 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || ||||| || || ||||| | || || | ||||||||| || || Sbjct 37544 TTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTA 37485 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || || || || |||||||||||| Sbjct 37484 ATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq103 Length=70461 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || |||||||| || ||||||||||| || || ||||| | || || | | Sbjct 50345 AGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTT 50286 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || | ||||||||||| ||||| | | ||||| ||| ||||||||| Sbjct 50285 CCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCT 50226 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || || || || || ||||| || || ||||| | || || | ||||||||| || || Sbjct 50225 TTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTA 50166 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| |||||||||||||| Sbjct 50165 ATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651588736108