Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq106 87.8 2e-12 seq103 84.2 2e-11 >seq106 Length=63987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | || |||| || ||||| | || ||||| ||||| || || || Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 37615 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| | ||| |||| |||||||||||| | || |||| ||| ||||| || || Sbjct 37614 AAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGG 37555 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || || ||| ||| | |||| ||||| | || || Sbjct 37554 GATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 37495 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || |||| || || || || || ||||||||||| || ||||| Sbjct 37494 TTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq103 Length=70461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | || || || || ||||| | || ||| ||||| || || || || Sbjct 50355 TCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGA 50296 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| |||| ||||||||||| | || |||| ||| ||||| || || Sbjct 50295 AAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGG 50236 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || |||||||| ||||| || ||| ||| | |||| ||||| | || || Sbjct 50235 TATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 50176 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 ||| || |||| ||||| || || || || ||||| || || ||||| || Sbjct 50175 TTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCATGGC 50125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002149092560